U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PRPF40B pre-mRNA processing factor 40 homolog B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 712580, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
PRPF40Bprovided by VGNC
Official Full Name
pre-mRNA processing factor 40 homolog Bprovided by VGNC
Primary source
VGNC:VGNC:76312
See related
Ensembl:ENSMMUG00000022495
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PRPF40B in Genome Data Viewer
Location:
chromosome: 11
Exon count:
29
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (49244680..49266233)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (47918892..47940457)

Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene protein/nucleic acid deglycase DJ-1-like Neighboring gene U6 spliceosomal RNA Neighboring gene family with sequence similarity 186 member B Neighboring gene HIG1 domain family member 1A, mitochondrial pseudogene Neighboring gene formin like 3 Neighboring gene 60S ribosomal protein L27a-like Neighboring gene transmembrane BAX inhibitor motif containing 6 Neighboring gene NCK associated protein 5 like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pre-mRNA-processing factor 40 homolog B
Names
PRP40 pre-mRNA processing factor 40 homolog B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041764.1 Reference Mmul_10 Primary Assembly

    Range
    49244680..49266233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015151674.1 → XP_015007160.1  pre-mRNA-processing factor 40 homolog B isoform X3

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (6) summary
    smart00441
    Location:655 → 703
    FF; Contains two conserved F residues
    COG5104
    Location:111 → 603
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:159 → 188
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam00397
    Location:120 → 145
    WW; WW domain
    pfam01846
    Location:300 → 349
    FF; FF domain
    cl21455
    Location:422 → 480
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_015151677.1 → XP_015007163.1  pre-mRNA-processing factor 40 homolog B isoform X9

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (5) summary
    smart00441
    Location:618 → 666
    FF; Contains two conserved F residues
    COG5104
    Location:117 → 566
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:122 → 151
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam01846
    Location:263 → 312
    FF; FF domain
    cl21455
    Location:385 → 443
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_015151675.1 → XP_015007161.1  pre-mRNA-processing factor 40 homolog B isoform X4

    UniProtKB/TrEMBL
    A0A1D5RAN4, G7N6X2
    Related
    ENSMMUP00000057375.2, ENSMMUT00000076536.2
    Conserved Domains (6) summary
    smart00441
    Location:655 → 703
    FF; Contains two conserved F residues
    COG5104
    Location:111 → 603
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:159 → 188
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam00397
    Location:120 → 145
    WW; WW domain
    pfam01846
    Location:300 → 349
    FF; FF domain
    cl21455
    Location:422 → 480
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. XM_015151676.2 → XP_015007162.1  pre-mRNA-processing factor 40 homolog B isoform X5

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (6) summary
    smart00441
    Location:628 → 676
    FF; Contains two conserved F residues
    COG5104
    Location:84 → 576
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:132 → 161
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam00397
    Location:93 → 118
    WW; WW domain
    pfam01846
    Location:273 → 322
    FF; FF domain
    cl21455
    Location:395 → 453
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_028829466.1 → XP_028685299.1  pre-mRNA-processing factor 40 homolog B isoform X10

    UniProtKB/TrEMBL
    F7A3U9, G7N6X2
    Related
    ENSMMUP00000029596.4, ENSMMUT00000031636.4
    Conserved Domains (2) summary
    smart00441
    Location:591 → 639
    FF; Contains two conserved F residues
    COG5104
    Location:90 → 539
    PRP40; Splicing factor [RNA processing and modification]

  6. XM_028829462.1 → XP_028685295.1  pre-mRNA-processing factor 40 homolog B isoform X6

    UniProtKB/TrEMBL
    F7A3V8, G7N6X2
    Related
    ENSMMUP00000029595.4, ENSMMUT00000031635.4
    Conserved Domains (2) summary
    smart00441
    Location:628 → 676
    FF; Contains two conserved F residues
    COG5104
    Location:84 → 576
    PRP40; Splicing factor [RNA processing and modification]

  7. XM_028829463.1 → XP_028685296.1  pre-mRNA-processing factor 40 homolog B isoform X7

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (2) summary
    smart00441
    Location:627 → 675
    FF; Contains two conserved F residues
    COG5104
    Location:83 → 575
    PRP40; Splicing factor [RNA processing and modification]

  8. XM_028829464.1 → XP_028685297.1  pre-mRNA-processing factor 40 homolog B isoform X7

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (2) summary
    smart00441
    Location:627 → 675
    FF; Contains two conserved F residues
    COG5104
    Location:83 → 575
    PRP40; Splicing factor [RNA processing and modification]

  9. XM_028829460.1 → XP_028685293.1  pre-mRNA-processing factor 40 homolog B isoform X1

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (2) summary
    smart00441
    Location:664 → 712
    FF; Contains two conserved F residues
    COG5104
    Location:120 → 612
    PRP40; Splicing factor [RNA processing and modification]

  10. XM_028829461.1 → XP_028685294.1  pre-mRNA-processing factor 40 homolog B isoform X2

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (2) summary
    smart00441
    Location:664 → 712
    FF; Contains two conserved F residues
    COG5104
    Location:120 → 612
    PRP40; Splicing factor [RNA processing and modification]

  11. XM_028829465.1 → XP_028685298.1  pre-mRNA-processing factor 40 homolog B isoform X8

    UniProtKB/TrEMBL
    G7N6X2
    Conserved Domains (2) summary
    smart00441
    Location:627 → 675
    FF; Contains two conserved F residues
    COG5104
    Location:126 → 575
    PRP40; Splicing factor [RNA processing and modification]

RNA

  1. XR_003720617.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.