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LOC712405 ficolin-1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 712405, updated on 9-Nov-2023

Summary

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Gene symbol
LOC712405
Gene description
ficolin-1
See related
Ensembl:ENSMMUG00000059959
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
FCN1
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Genomic context

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See LOC712405 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (3316591..3325013)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (3414941..3423364)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993575 Neighboring gene uncharacterized LOC114672620 Neighboring gene ficolin-2-like Neighboring gene ficolin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ficolin-1
Names
ficolin (collagen/fibrinogen domain containing) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    3316591..3325013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015116399.2 → XP_014971885.2  ficolin-1

    UniProtKB/TrEMBL
    A0A5F8AJI6, G7NF89
    Related
    ENSMMUP00000077109.1, ENSMMUT00000100521.1
    Conserved Domains (2) summary
    pfam01391
    Location:51 → 107
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:115 → 325
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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