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DCHS1 dachsous cadherin-related 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 711938, updated on 17-Aug-2024

Summary

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Official Symbol
DCHS1provided by VGNC
Official Full Name
dachsous cadherin-related 1provided by VGNC
Primary source
VGNC:VGNC:71619
See related
Ensembl:ENSMMUG00000007754
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See DCHS1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (59285142..59318855)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (60139575..60159151)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene interferon-induced very large GTPase 1-like Neighboring gene mitochondrial ribosomal protein L17 Neighboring gene tripeptidyl peptidase 1 Neighboring gene TATA-box binding protein associated factor 10 Neighboring gene integrin linked kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-16
Names
dachsous 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    59285142..59318855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028833752.1 → XP_028689585.1  protocadherin-16 isoform X1

    UniProtKB/TrEMBL
    A0A1D5Q6M1
    Conserved Domains (1) summary
    cd11304
    Location:1111 → 1204
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_015114958.2 → XP_014970444.2  protocadherin-16 isoform X2

    UniProtKB/TrEMBL
    A0A1D5Q6M1, F7BXD9
    Related
    ENSMMUP00000010188.3, ENSMMUT00000010861.4
    Conserved Domains (2) summary
    cd11304
    Location:1037 → 1130
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:8 → 64
    CA; Cadherin repeats
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials