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HDAC5 histone deacetylase 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 711456, updated on 17-Aug-2024

Summary

Official Symbol
HDAC5provided by VGNC
Official Full Name
histone deacetylase 5provided by VGNC
Primary source
VGNC:VGNC:73166
See related
Ensembl:ENSMMUG00000006806
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
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Genomic context

See HDAC5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
32
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (55331843..55380169, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (49940558..49989067, complement)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene LSM12 homolog Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene homologous recombination factor with OB-fold Neighboring gene ankyrin repeat and SOCS box containing 16

Genomic regions, transcripts, and products

General protein information

Preferred Names
histone deacetylase 5
NP_001245027.1
XP_014975211.1
XP_014975212.1
XP_014975213.1
XP_014975215.1
XP_014975216.1
XP_014975217.1
XP_014975218.1
XP_014975219.1
XP_028691440.1
XP_028691441.1
XP_028691442.1
XP_028691443.1
XP_028691444.1
XP_028691445.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001258098.1NP_001245027.1  histone deacetylase 5

    See identical proteins and their annotated locations for NP_001245027.1

    Status: PROVISIONAL

    Source sequence(s)
    JU470486
    UniProtKB/TrEMBL
    F7GZL0, H9YUC4
    Related
    ENSMMUP00000061782.1, ENSMMUT00000106703.1
    Conserved Domains (2) summary
    cd10164
    Location:69165
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6801096
    HDAC5; Histone deacetylase 5

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    55331843..55380169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015119730.2XP_014975216.1  histone deacetylase 5 isoform X7

    UniProtKB/TrEMBL
    H9FNB9
    Conserved Domains (2) summary
    cd10007
    Location:6701086
    HDAC5; Histone deacetylase 5
    cl23765
    Location:68155
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
  2. XM_015119726.2XP_014975212.1  histone deacetylase 5 isoform X5

    UniProtKB/TrEMBL
    F7GZL0
    Conserved Domains (2) summary
    cd10164
    Location:68164
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6791095
    HDAC5; Histone deacetylase 5
  3. XM_015119729.2XP_014975215.1  histone deacetylase 5 isoform X6

    UniProtKB/TrEMBL
    H9FNB9
    Conserved Domains (2) summary
    cd10007
    Location:6711087
    HDAC5; Histone deacetylase 5
    cl23765
    Location:69156
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
  4. XM_015119732.2XP_014975218.1  histone deacetylase 5 isoform X8

    UniProtKB/TrEMBL
    A0A1D5QK54, A0A1D5RD12, F7GZK7
    Related
    ENSMMUP00000048427.2, ENSMMUT00000071045.2
    Conserved Domains (2) summary
    cd10164
    Location:27123
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6381054
    HDAC5; Histone deacetylase 5
  5. XM_015119731.2XP_014975217.1  histone deacetylase 5 isoform X8

    UniProtKB/TrEMBL
    A0A1D5QK54, A0A1D5RD12, F7GZK7
    Related
    ENSMMUP00000063065.1, ENSMMUT00000097870.1
    Conserved Domains (2) summary
    cd10164
    Location:27123
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6381054
    HDAC5; Histone deacetylase 5
  6. XM_015119727.2XP_014975213.1  histone deacetylase 5 isoform X5

    UniProtKB/TrEMBL
    F7GZL0
    Conserved Domains (2) summary
    cd10164
    Location:68164
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6791095
    HDAC5; Histone deacetylase 5
  7. XM_015119725.2XP_014975211.1  histone deacetylase 5 isoform X4

    UniProtKB/TrEMBL
    F7GZL0, H9YUC4
    Conserved Domains (2) summary
    cd10164
    Location:69165
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6801096
    HDAC5; Histone deacetylase 5
  8. XM_028835611.1XP_028691444.1  histone deacetylase 5 isoform X9

    UniProtKB/TrEMBL
    A0A1D5RJ53
    Conserved Domains (2) summary
    cd10164
    Location:98194
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:7091125
    HDAC5; Histone deacetylase 5
  9. XM_028835612.1XP_028691445.1  histone deacetylase 5 isoform X10

    UniProtKB/TrEMBL
    A0A1D5RJ53
    Conserved Domains (2) summary
    cd10007
    Location:7711187
    HDAC5; Histone deacetylase 5
    cl25407
    Location:174261
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
  10. XM_028835609.1XP_028691442.1  histone deacetylase 5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5RJ53
    Conserved Domains (2) summary
    cd10007
    Location:7761192
    HDAC5; Histone deacetylase 5
    cl25407
    Location:174261
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
  11. XM_028835608.1XP_028691441.1  histone deacetylase 5 isoform X2

    UniProtKB/TrEMBL
    A0A1D5RJ53
    Conserved Domains (2) summary
    cd10164
    Location:174270
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:7801196
    HDAC5; Histone deacetylase 5
  12. XM_028835607.1XP_028691440.1  histone deacetylase 5 isoform X1

    UniProtKB/TrEMBL
    A0A1D5RJ53
    Conserved Domains (2) summary
    cd10164
    Location:174270
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:7851201
    HDAC5; Histone deacetylase 5
  13. XM_028835610.1XP_028691443.1  histone deacetylase 5 isoform X8

    UniProtKB/TrEMBL
    A0A1D5QK54, A0A1D5RD12, F7GZK7
    Conserved Domains (2) summary
    cd10164
    Location:27123
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6381054
    HDAC5; Histone deacetylase 5
  14. XM_015119733.2XP_014975219.1  histone deacetylase 5 isoform X8

    UniProtKB/TrEMBL
    A0A1D5QK54, A0A1D5RD12, F7GZK7
    Conserved Domains (2) summary
    cd10164
    Location:27123
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:6381054
    HDAC5; Histone deacetylase 5