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SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 711134, updated on 17-Aug-2024

Summary

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Official Symbol
SMARCC1provided by VGNC
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1provided by VGNC
Primary source
VGNC:VGNC:84075
See related
Ensembl:ENSMMUG00000009345
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SMARCC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (103600078..103793519, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (94730907..94928213)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene bolA-like protein 2 pseudogene Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene chondroitin sulfate proteoglycan 5 Neighboring gene DExH-box helicase 30 Neighboring gene uncharacterized LOC114676343 Neighboring gene microRNA mir-1226 Neighboring gene microtubule associated protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of npBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF complex subunit SMARCC1
Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    103600078..103793519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028844071.1 → XP_028699904.1  SWI/SNF complex subunit SMARCC1 isoform X2

    UniProtKB/TrEMBL
    A0A5F8A5U9
    Related
    ENSMMUP00000073315.1, ENSMMUT00000094659.1
    Conserved Domains (4) summary
    COG5259
    Location:444 → 710
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam16496
    Location:32 → 445
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:706 → 770
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    pfam16495
    Location:883 → 954
    SWIRM-assoc_1; SWIRM-associated region 1

  2. XM_015131071.2 → XP_014986557.1  SWI/SNF complex subunit SMARCC1 isoform X1

    UniProtKB/TrEMBL
    F7HJJ3, H9F8X2
    Related
    ENSMMUP00000012239.3, ENSMMUT00000013058.4
    Conserved Domains (4) summary
    COG5259
    Location:444 → 710
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam16495
    Location:883 → 954
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:35 → 445
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:706 → 770
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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