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CDX2 caudal type homeobox 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 711094, updated on 17-Aug-2024

Summary

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Official Symbol
CDX2provided by VGNC
Official Full Name
caudal type homeobox 2provided by VGNC
Primary source
VGNC:VGNC:106254
Locus tag
EGK_09199
See related
Ensembl:ENSMMUG00000052070
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CDX2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (7180406..7188777, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (7463335..7470573, complement)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene pancreatic and duodenal homeobox 1 Neighboring gene collagen alpha-2(I) chain-like Neighboring gene uncharacterized LOC106994193 Neighboring gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase Neighboring gene uncharacterized LOC106994196 Neighboring gene fms related receptor tyrosine kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CDX2 in the formation of the trophectoderm lineage in primate embryos. Sritanaudomchai H, et al. Dev Biol, 2009 Nov 1. PMID 19733166, Free PMC Article
  2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior axis specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryo development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein CDX-2
Names
Caudal-type homeobox protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    7180406..7188777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015120796.2 → XP_014976282.1  homeobox protein CDX-2 isoform X2

    Conserved Domains (2) summary
    pfam00046
    Location:190 → 228
    Homeobox; Homeobox domain
    pfam04731
    Location:13 → 171
    Caudal_act; Caudal like protein activation region

  2. XM_001096874.4 → XP_001096874.1  homeobox protein CDX-2 isoform X1

    See identical proteins and their annotated locations for XP_001096874.1

    UniProtKB/TrEMBL
    A0A5F8AQF4, A0A8J8XRJ2, F7FQH1
    Related
    ENSMMUP00000079152.1, ENSMMUT00000103287.1
    Conserved Domains (2) summary
    pfam00046
    Location:190 → 243
    Homeobox; Homeobox domain
    pfam04731
    Location:13 → 171
    Caudal_act; Caudal like protein activation region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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