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PAX2 paired box 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 710687, updated on 17-Aug-2024

Summary

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Official Symbol
PAX2provided by VGNC
Official Full Name
paired box 2provided by VGNC
Primary source
VGNC:VGNC:75761
See related
Ensembl:ENSMMUG00000009163
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PAX2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (101205856..101299796)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (96372924..96477441)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene uncharacterized LOC114670023 Neighboring gene uncharacterized LOC114670024 Neighboring gene SMC5-SMC6 complex localization factor 2 Neighboring gene semaphorin 4G Neighboring gene mitochondrial ribosomal protein L43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    101205856..101299796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028826770.1 → XP_028682603.1  paired box protein Pax-2 isoform X5

    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:336 → 387
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:286 → 309
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_015147957.2 → XP_015003443.2  paired box protein Pax-2 isoform X2

    UniProtKB/TrEMBL
    G7N0X9
    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:336 → 394
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:286 → 309
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  3. XM_015147956.2 → XP_015003442.2  paired box protein Pax-2 isoform X2

    UniProtKB/TrEMBL
    G7N0X9
    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:336 → 394
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:286 → 309
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  4. XM_015147960.2 → XP_015003446.2  paired box protein Pax-2 isoform X6

    UniProtKB/TrEMBL
    G7N0X9
    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:313 → 371
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:263 → 286
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  5. XM_015147958.2 → XP_015003444.2  paired box protein Pax-2 isoform X3

    UniProtKB/TrEMBL
    G7N0X9
    Related
    ENSMMUP00000012017.4, ENSMMUT00000012816.4
    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:336 → 446
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:286 → 309
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  6. XM_015147955.2 → XP_015003441.2  paired box protein Pax-2 isoform X1

    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:336 → 421
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:286 → 309
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  7. XM_015147961.2 → XP_015003447.2  paired box protein Pax-2 isoform X7

    UniProtKB/TrEMBL
    G7N0X9
    Related
    ENSMMUP00000015205.4, ENSMMUT00000016223.4
    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:313 → 423
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:263 → 286
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  8. XM_015147959.2 → XP_015003445.2  paired box protein Pax-2 isoform X4

    Conserved Domains (3) summary
    smart00351
    Location:47 → 171
    PAX; Paired Box domain
    pfam12403
    Location:313 → 398
    Pax2_C; Paired-box protein 2 C terminal
    cl00084
    Location:263 → 286
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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