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LHX9 LIM homeobox 9 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 710636, updated on 17-Aug-2024

Summary

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Official Symbol
LHX9provided by VGNC
Official Full Name
LIM homeobox 9provided by VGNC
Primary source
VGNC:VGNC:74044
Locus tag
EGK_01820
See related
Ensembl:ENSMMUG00000012259
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See LHX9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (55339622..55358001)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (168845516..168859592, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1B Neighboring gene protein FAM204A pseudogene Neighboring gene chromosome 1 C1orf53 homolog Neighboring gene uncharacterized LOC114679636 Neighboring gene NIMA related kinase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    55339622..55358001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015120769.2 → XP_014976255.1  LIM/homeobox protein Lhx9 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QN93, A0A8J8Y9E1, F6V031, G7MEZ9
    Related
    ENSMMUP00000016079.3, ENSMMUT00000017169.3
    Conserved Domains (3) summary
    cd09377
    Location:129 → 187
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:61 → 124
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:271 → 324
    Homeobox; Homeobox domain

  2. XM_028851792.1 → XP_028707625.1  LIM/homeobox protein Lhx9 isoform X3

    Conserved Domains (3) summary
    cd09377
    Location:129 → 187
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:61 → 124
    LIM1_Lhx2; The first LIM domain of Lhx2
    smart00389
    Location:267 → 312
    HOX; Homeodomain

  3. XM_028851784.1 → XP_028707617.1  LIM/homeobox protein Lhx9 isoform X2

    Conserved Domains (3) summary
    cd09377
    Location:110 → 168
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:42 → 105
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:252 → 305
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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