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BATF3 basic leucine zipper ATF-like transcription factor 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 710551, updated on 17-Aug-2024

Summary

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Official Symbol
BATF3provided by VGNC
Official Full Name
basic leucine zipper ATF-like transcription factor 3provided by VGNC
Primary source
VGNC:VGNC:70143
See related
Ensembl:ENSMMUG00000015056
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See BATF3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (70170982..70186692, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (153824777..153840048)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene riboflavin kinase pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106993671 Neighboring gene NSL1 component of MIS12 kinetochore complex Neighboring gene 60S ribosomal protein L21 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper transcriptional factor ATF-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    70170982..70186692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015117211.2 → XP_014972697.1  basic leucine zipper transcriptional factor ATF-like 3 isoform X1

    UniProtKB/TrEMBL
    F6TKQ3
    Related
    ENSMMUP00000019732.3, ENSMMUT00000021102.4
    Conserved Domains (1) summary
    cd14701
    Location:55 → 112
    bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain

  2. XM_028853023.1 → XP_028708856.1  basic leucine zipper transcriptional factor ATF-like 3 isoform X3

    Conserved Domains (1) summary
    cl21462
    Location:33 → 90
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_001107737.4 → XP_001107737.1  basic leucine zipper transcriptional factor ATF-like 3 isoform X2

    See identical proteins and their annotated locations for XP_001107737.1

    UniProtKB/TrEMBL
    F6TKQ3
    Conserved Domains (1) summary
    cl21462
    Location:35 → 92
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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Research Materials