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SEMA4F ssemaphorin 4F [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 710297, updated on 17-Aug-2024

Summary

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Official Symbol
SEMA4Fprovided by VGNC
Official Full Name
ssemaphorin 4Fprovided by VGNC
Primary source
VGNC:VGNC:77167
Locus tag
EGK_05481
See related
Ensembl:ENSMMUG00000005149
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SEMA4F in Genome Data Viewer
Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (34125589..34154015, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (75681269..75709704)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671931 Neighboring gene protein phosphatase 1 regulatory subunit 14B pseudogene Neighboring gene Golgi apparatus membrane protein TVP23 homolog B pseudogene Neighboring gene torsin-1B-like Neighboring gene meiosis 1 associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-4F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    34125589..34154015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015112715.2 → XP_014968201.1  semaphorin-4F isoform X3

    UniProtKB/TrEMBL
    A0A1D5QP56, H9F760
    Related
    ENSMMUP00000049833.2, ENSMMUT00000060669.2
    Conserved Domains (3) summary
    cd11261
    Location:52 → 478
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:479 → 530
    PSI; Plexin repeat
    cl11960
    Location:537 → 616
    Ig; Immunoglobulin domain

  2. XM_015112714.2 → XP_014968200.1  semaphorin-4F isoform X2

    UniProtKB/TrEMBL
    H9F760
    Conserved Domains (3) summary
    cd11261
    Location:52 → 510
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:511 → 562
    PSI; Plexin repeat
    cl11960
    Location:569 → 648
    Ig; Immunoglobulin domain

  3. XM_015112713.2 → XP_014968199.1  semaphorin-4F isoform X1

    UniProtKB/TrEMBL
    A0A5S6R6P5, A0A8J8YQR7, F7DBA4, G7NAF5, H9F760
    Related
    ENSMMUP00000006819.4, ENSMMUT00000007256.4
    Conserved Domains (3) summary
    cd11261
    Location:52 → 511
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:512 → 563
    PSI; Plexin repeat
    cl11960
    Location:570 → 649
    Ig; Immunoglobulin domain

  4. XM_015112716.2 → XP_014968202.1  semaphorin-4F isoform X4

    Conserved Domains (2) summary
    cd11261
    Location:52 → 511
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    smart00423
    Location:512 → 541
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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