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NECTIN1 nectin cell adhesion molecule 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 710072, updated on 17-Aug-2024

Summary

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Official Symbol
NECTIN1provided by VGNC
Official Full Name
nectin cell adhesion molecule 1provided by VGNC
Primary source
VGNC:VGNC:82196
Locus tag
EGK_06994
See related
Ensembl:ENSMMUG00000008274
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See NECTIN1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (112727014..112795076, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (112517617..112586382, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672422 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114672423 Neighboring gene spliceosome RNA helicase DDX39B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nectin-1
Names
poliovirus receptor-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    112727014..112795076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015115962.2 → XP_014971448.1  nectin-1

    UniProtKB/TrEMBL
    A0A5F7ZKL6, A0A8J8YPE9, G7NCL1
    Related
    ENSMMUP00000066161.1, ENSMMUT00000091179.1
    Conserved Domains (3) summary
    cd05886
    Location:45 → 146
    Ig1_Nectin-1_like; First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins
    cd05890
    Location:149 → 246
    Ig2_Nectin-1_like; Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins
    smart00408
    Location:267 → 326
    IGc2; Immunoglobulin C-2 Type
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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