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BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 709877, updated on 17-Aug-2024

Summary

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Official Symbol
BLOC1S2provided by VGNC
Official Full Name
biogenesis of lysosomal organelles complex 1 subunit 2provided by VGNC
Primary source
VGNC:VGNC:70357
Locus tag
EGK_19976
See related
Ensembl:ENSMMUG00000061808
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See BLOC1S2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (100737992..100747761, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (95848093..95857804, complement)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene CWF19 like cell cycle control factor 1 Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene uncharacterized LOC107000251 Neighboring gene polycystin 2 like 1, transient receptor potential cation channel Neighboring gene uncharacterized LOC100430823 Neighboring gene stearoyl-CoA desaturase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables gamma-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BLOC-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of BORC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of gamma-tubulin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biogenesis of lysosome-related organelles complex 1 subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266915.1 → NP_001253844.1  biogenesis of lysosome-related organelles complex 1 subunit 2

    See identical proteins and their annotated locations for NP_001253844.1

    Status: PROVISIONAL

    Source sequence(s)
    JV600271
    UniProtKB/TrEMBL
    A0A8J8XEG4, G7N0X2, I2CUM4
    Conserved Domains (1) summary
    pfam10046
    Location:43 → 137
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    100737992..100747761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028853459.1 → XP_028709292.1  biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZZK6
    Related
    ENSMMUP00000070571.1, ENSMMUT00000101116.1
    Conserved Domains (1) summary
    pfam10046
    Location:46 → 132
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2

  2. XM_015147797.2 → XP_015003283.1  biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X2

    UniProtKB/TrEMBL
    H9EM67
    Conserved Domains (1) summary
    pfam10046
    Location:1 → 94
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2

  3. XM_015147798.2 → XP_015003284.1  biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X3

    Conserved Domains (1) summary
    pfam10046
    Location:11 → 90
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2
Nucleotide Protein
Heading Accession and Version

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