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Fancd2os Fancd2 opposite strand [ Mus musculus (house mouse) ]

Gene ID: 70979, updated on 27-Nov-2024

Summary

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Official Symbol
Fancd2osprovided by MGI
Official Full Name
Fancd2 opposite strandprovided by MGI
Primary source
MGI:MGI:1918229
See related
Ensembl:ENSMUSG00000033963 AllianceGenome:MGI:1918229
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4931417G12Rik
Summary
Orthologous to human FANCD2OS (FANCD2 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 7.7) and kidney adult (RPKM 0.2) See more
Orthologs
human all
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Genomic context

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See Fancd2os in Genome Data Viewer
Location:
6 E3; 6 52.8 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113573722..113577735, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113596761..113600715, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene Fanconi anemia, complementation group D2 Neighboring gene predicted gene, 46971 Neighboring gene STARR-seq mESC enhancer starr_17043 Neighboring gene predicted gene, 38874 Neighboring gene STARR-seq mESC enhancer starr_17044 Neighboring gene BRICK1, SCAR/WAVE actin-nucleating complex subunit Neighboring gene von Hippel-Lindau tumor suppressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Relaxed negative selection in germinal centers and impaired affinity maturation in bcl-xL transgenic mice. Takahashi Y, et al. J Exp Med, 1999 Aug 2. PMID 10430628, Free PMC Article
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
FANCD2 opposite strand protein
Names
Fanconi anemia group D2 protein opposite strand transcript protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027633.3 → NP_081909.2  FANCD2 opposite strand protein

    See identical proteins and their annotated locations for NP_081909.2

    Status: VALIDATED

    Source sequence(s)
    AC153589, AK016461
    Consensus CDS
    CCDS20427.1
    UniProtKB/Swiss-Prot
    Q80XT0, Q80Y40, Q9D4K4
    UniProtKB/TrEMBL
    A0A0R4J1W5
    Related
    ENSMUSP00000035316.5, ENSMUST00000035870.5
    Conserved Domains (1) summary
    pfam15124
    Location:3 → 178
    FANCD2OS; FANCD2 opposite strand protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    113573722..113577735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036152304.1 → XP_036008197.1  FANCD2 opposite strand protein isoform X2

    UniProtKB/Swiss-Prot
    Q80XT0, Q80Y40, Q9D4K4
    Conserved Domains (1) summary
    pfam15124
    Location:25 → 200
    FANCD2OS; FANCD2 opposite strand protein

  2. XM_006506608.4 → XP_006506671.1  FANCD2 opposite strand protein isoform X2

    UniProtKB/Swiss-Prot
    Q80XT0, Q80Y40, Q9D4K4
    Conserved Domains (1) summary
    pfam15124
    Location:25 → 200
    FANCD2OS; FANCD2 opposite strand protein

  3. XM_006506610.4 → XP_006506673.1  FANCD2 opposite strand protein isoform X3

    See identical proteins and their annotated locations for XP_006506673.1

    UniProtKB/Swiss-Prot
    Q80XT0, Q80Y40, Q9D4K4
    UniProtKB/TrEMBL
    A0A0R4J1W5
    Conserved Domains (1) summary
    pfam15124
    Location:3 → 178
    FANCD2OS; FANCD2 opposite strand protein

  4. XM_006506609.4 → XP_006506672.1  FANCD2 opposite strand protein isoform X3

    See identical proteins and their annotated locations for XP_006506672.1

    UniProtKB/Swiss-Prot
    Q80XT0, Q80Y40, Q9D4K4
    UniProtKB/TrEMBL
    A0A0R4J1W5
    Conserved Domains (1) summary
    pfam15124
    Location:3 → 178
    FANCD2OS; FANCD2 opposite strand protein

  5. XM_017321739.2 → XP_017177228.1  FANCD2 opposite strand protein isoform X1

    UniProtKB/Swiss-Prot
    Q80XT0, Q80Y40, Q9D4K4
    Conserved Domains (1) summary
    pfam15124
    Location:35 → 210
    FANCD2OS; FANCD2 opposite strand protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D4K4.1 GenPept UniProtKB/Swiss-Prot:Q9D4K4

Gene LinkOut

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