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HOMER1 homer scaffold protein 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 709774, updated on 17-Aug-2024

Summary

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Official Symbol
HOMER1provided by VGNC
Official Full Name
homer scaffold protein 1provided by VGNC
Primary source
VGNC:VGNC:73405
See related
Ensembl:ENSMMUG00000017057
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HOMER1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (76183530..76348444, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (76093985..76229867, complement)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene junction mediating and regulatory protein, p53 cofactor Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene methionine adenosyltransferase 2 subunit beta pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L29-like Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene terminal nucleotidyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled glutamate receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled glutamate receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of store-operated calcium entry IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homer protein homolog 1
Names
homer homolog 1
homer scaffolding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261570.1 → NP_001248499.1  homer protein homolog 1

    See identical proteins and their annotated locations for NP_001248499.1

    Status: PROVISIONAL

    Source sequence(s)
    JV044621
    UniProtKB/TrEMBL
    A0A1D5R084, A0A1D5R1S2, H9EPI5
    Related
    ENSMMUP00000053717.2, ENSMMUT00000053494.2
    Conserved Domains (2) summary
    COG1196
    Location:184 → 352
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd01206
    Location:3 → 111
    EVH1_Homer_Vesl; Homer/Vesl family proteins EVH1 domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    76183530..76348444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849245.1 → XP_028705078.1  homer protein homolog 1 isoform X1

    Conserved Domains (1) summary
    cd01206
    Location:3 → 111
    EVH1_Homer_Vesl; Homer/Vesl family proteins EVH1 domain

RNA

  1. XR_003730106.1 RNA Sequence

  2. XR_003730104.1 RNA Sequence

  3. XR_003730105.1 RNA Sequence

  4. XR_003730107.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials