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CDH23 cadherin related 23 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 709433, updated on 17-Aug-2024

Summary

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Official Symbol
CDH23provided by VGNC
Official Full Name
cadherin related 23provided by VGNC
Primary source
VGNC:VGNC:70942
See related
Ensembl:ENSMMUG00000014733
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CDH23 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
71
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (65959072..66379116, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (60552586..60974387, complement)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100423563 Neighboring gene uncharacterized LOC107000167 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene U7 small nuclear RNA Neighboring gene prosaposin Neighboring gene chromosome 9 C10orf105 homolog Neighboring gene V-set immunoregulatory receptor Neighboring gene uncharacterized LOC107000169 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114669974 Neighboring gene solute carrier family 29 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    65959072..66379116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028826508.1 → XP_028682341.1  cadherin-23 isoform X2

    UniProtKB/TrEMBL
    G7N279
    Conserved Domains (1) summary
    cd11304
    Location:1424 → 1521
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_015147422.2 → XP_015002908.2  cadherin-23 isoform X3

    UniProtKB/TrEMBL
    G7N279
    Conserved Domains (1) summary
    cd11304
    Location:1426 → 1523
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_015147425.2 → XP_015002911.2  cadherin-23 isoform X1

    UniProtKB/TrEMBL
    F7GVN5, G7N279
    Related
    ENSMMUP00000017018.4, ENSMMUT00000018179.4
    Conserved Domains (1) summary
    cd11304
    Location:1426 → 1523
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_028826512.1 → XP_028682345.1  cadherin-23 isoform X7

    Conserved Domains (2) summary
    cd11304
    Location:502 → 596
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:3 → 59
    CA; Cadherin repeats

  5. XM_028826515.1 → XP_028682348.1  cadherin-23 isoform X9

    Conserved Domains (1) summary
    cd11304
    Location:166 → 264
    Cadherin_repeat; Cadherin tandem repeat domain

  6. XM_028826513.1 → XP_028682346.1  cadherin-23 isoform X8

    Conserved Domains (1) summary
    cd11304
    Location:166 → 264
    Cadherin_repeat; Cadherin tandem repeat domain

  7. XM_028826514.1 → XP_028682347.1  cadherin-23 isoform X9

    Conserved Domains (1) summary
    cd11304
    Location:166 → 264
    Cadherin_repeat; Cadherin tandem repeat domain

  8. XM_028826510.1 → XP_028682343.1  cadherin-23 isoform X4

    UniProtKB/TrEMBL
    G7N279
    Conserved Domains (1) summary
    cd11304
    Location:1426 → 1523
    Cadherin_repeat; Cadherin tandem repeat domain

  9. XM_015147424.2 → XP_015002910.2  cadherin-23 isoform X6

    Conserved Domains (1) summary
    cd11304
    Location:1426 → 1523
    Cadherin_repeat; Cadherin tandem repeat domain

  10. XM_028826511.1 → XP_028682344.1  cadherin-23 isoform X5

    Conserved Domains (1) summary
    cd11304
    Location:1426 → 1523
    Cadherin_repeat; Cadherin tandem repeat domain

RNA

  1. XR_001447151.2 RNA Sequence

  2. XR_003719359.1 RNA Sequence

Nucleotide Protein
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