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GABPA GA binding protein transcription factor subunit alpha [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708312, updated on 17-Aug-2024

Summary

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Official Symbol
GABPAprovided by VGNC
Official Full Name
GA binding protein transcription factor subunit alphaprovided by VGNC
Primary source
VGNC:VGNC:72844
Locus tag
EGK_13349
See related
Ensembl:ENSMMUG00000008727
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See GABPA in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (20894100..20942468, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (21215326..21263755, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene amyloid beta precursor protein Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114676831 Neighboring gene protein LLP homolog pseudogene Neighboring gene ATP synthase peripheral stalk subunit F6 Neighboring gene junctional adhesion molecule 2 Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene MIR155 host gene Neighboring gene microRNA mir-155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GA-binding protein alpha chain
Names
GA binding protein transcription factor alpha subunit
GA binding protein transcription factor, alpha subunit 60kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266585.1 → NP_001253514.1  GA-binding protein alpha chain

    See identical proteins and their annotated locations for NP_001253514.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046656
    UniProtKB/TrEMBL
    A0A8J8Y3P3, F7E124, G7MNB2, H9Z7C2
    Related
    ENSMMUP00000066819.1, ENSMMUT00000100354.1
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:319 → 403
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    20894100..20942468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015133053.2 → XP_014988539.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3P3, F7E124, G7MNB2, H9Z7C2
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:319 → 403
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  2. XM_028844959.1 → XP_028700792.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3P3, F7E124, G7MNB2, H9Z7C2
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:319 → 403
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  3. XM_028844961.1 → XP_028700794.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3P3, F7E124, G7MNB2, H9Z7C2
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:319 → 403
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  4. XM_015133054.2 → XP_014988540.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3P3, F7E124, G7MNB2, H9Z7C2
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:319 → 403
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  5. XM_015133055.2 → XP_014988541.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3P3, F7E124, G7MNB2, H9Z7C2
    Related
    ENSMMUP00000074746.1, ENSMMUT00000085044.1
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:319 → 403
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain
Nucleotide Protein
Heading Accession and Version

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