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ZNF549 zinc finger protein 549 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708201, updated on 17-Aug-2024

Summary

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Official Symbol
ZNF549provided by VGNC
Official Full Name
zinc finger protein 549provided by VGNC
Primary source
VGNC:VGNC:79628
Locus tag
EGK_11141
See related
Ensembl:ENSMMUG00000006121
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human all
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Genomic context

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See ZNF549 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (57117042..57131406)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (51793141..51807505, complement)

Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 773 Neighboring gene vomeronasal 1 receptor macMulV1R-ps1047 pseudogene Neighboring gene zinc finger protein 550 Neighboring gene zinc finger protein 416

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 549

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041772.1 Reference Mmul_10 Primary Assembly

    Range
    57117042..57131406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001093701.4 → XP_001093701.2  zinc finger protein 549

    UniProtKB/TrEMBL
    F7B052
    Related
    ENSMMUP00000008047.4, ENSMMUT00000008560.4
    Conserved Domains (4) summary
    COG5048
    Location:223 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:391 → 411
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:27 → 67
    KRAB; KRAB box
    pfam13465
    Location:600 → 624
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials