U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

WHRN whirlin [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708051, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
WHRNprovided by VGNC
Official Full Name
whirlinprovided by VGNC
Primary source
VGNC:VGNC:79030
See related
Ensembl:ENSMMUG00000031977
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See WHRN in Genome Data Viewer
Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (28347040..28451394)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (24904932..25008422)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene uncharacterized LOC106993648 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114672737 Neighboring gene uncharacterized LOC114672738 Neighboring gene AT-hook transcription factor Neighboring gene orosomucoid 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
whirlin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    28347040..28451394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028834914.1 → XP_028690747.1  whirlin isoform X1

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03307
    Location:552 → 818
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  2. XM_028834916.1 → XP_028690749.1  whirlin isoform X2

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03307
    Location:552 → 817
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  3. XM_028834920.1 → XP_028690753.1  whirlin isoform X8

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
    pfam03154
    Location:605 → 791
    Atrophin-1; Atrophin-1 family

  4. XM_001096493.4 → XP_001096493.3  whirlin isoform X3

    UniProtKB/TrEMBL
    F7GW82, G7NG39
    Related
    ENSMMUP00000039757.3, ENSMMUT00000046729.3
    Conserved Domains (4) summary
    PHA03307
    Location:594 → 807
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  5. XM_015117003.2 → XP_014972489.2  whirlin isoform X4

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03378
    Location:608 → 862
    PHA03378; EBNA-3B; Provisional
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  6. XM_015117004.2 → XP_014972490.2  whirlin isoform X7

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03378
    Location:538 → 793
    PHA03378; EBNA-3B; Provisional
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cl11968
    Location:419 → 475
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

  7. XM_028834918.1 → XP_028690751.1  whirlin isoform X5

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03307
    Location:486 → 752
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:211 → 291
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:353 → 433
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  8. XM_028834919.1 → XP_028690752.1  whirlin isoform X6

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03307
    Location:528 → 741
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:211 → 291
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:353 → 433
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  9. XM_028834915.1 → XP_028690748.1  whirlin isoform X1

    UniProtKB/TrEMBL
    G7NG39
    Conserved Domains (4) summary
    PHA03307
    Location:552 → 818
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:37 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials