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PNLDC1 PARN like ribonuclease domain containing exonuclease 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707835, updated on 17-Aug-2024

Summary

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Official Symbol
PNLDC1provided by VGNC
Official Full Name
PARN like ribonuclease domain containing exonuclease 1provided by VGNC
Primary source
VGNC:VGNC:76089
See related
Ensembl:ENSMMUG00000004181
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PNLDC1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (10778964..10805689, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (160914778..160935842)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene calcineurin B homologous protein 1 pseudogene Neighboring gene insulin like growth factor 2 receptor Neighboring gene MAS1 proto-oncogene, G protein-coupled receptor Neighboring gene protein FAM136A pseudogene Neighboring gene small nucleolar RNA SNORA29 Neighboring gene mitochondrial ribosomal protein L18 Neighboring gene t-complex 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A)-specific ribonuclease PNLDC1
Names
PARN like, ribonuclease domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    10778964..10805689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028847006.1 → XP_028702839.1  poly(A)-specific ribonuclease PNLDC1 isoform X2

    UniProtKB/TrEMBL
    G7MR01
    Conserved Domains (1) summary
    pfam04857
    Location:8 → 363
    CAF1; CAF1 family ribonuclease

  2. XM_015137629.2 → XP_014993115.1  poly(A)-specific ribonuclease PNLDC1 isoform X3

    UniProtKB/TrEMBL
    G7MR01
    Related
    ENSMMUP00000044803.2, ENSMMUT00000057513.2
    Conserved Domains (1) summary
    pfam04857
    Location:8 → 373
    CAF1; CAF1 family ribonuclease

  3. XM_015137628.2 → XP_014993114.1  poly(A)-specific ribonuclease PNLDC1 isoform X1

    UniProtKB/TrEMBL
    F6X2Q9, G7MR01
    Related
    ENSMMUP00000005596.4, ENSMMUT00000005941.4
    Conserved Domains (1) summary
    pfam04857
    Location:8 → 373
    CAF1; CAF1 family ribonuclease

  4. XM_028847007.1 → XP_028702840.1  poly(A)-specific ribonuclease PNLDC1 isoform X4

    UniProtKB/TrEMBL
    G7MR01
    Conserved Domains (1) summary
    pfam04857
    Location:19 → 308
    CAF1; CAF1 family ribonuclease

  5. XM_028847008.1 → XP_028702841.1  poly(A)-specific ribonuclease PNLDC1 isoform X5

    Conserved Domains (1) summary
    pfam04857
    Location:1 → 241
    CAF1; CAF1 family ribonuclease

RNA

  1. XR_003728740.1 RNA Sequence

    Related
    ENSMMUT00000073252.2
Nucleotide Protein
Heading Accession and Version

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