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DCLRE1B DNA cross-link repair 1B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707742, updated on 17-Aug-2024

Summary

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Official Symbol
DCLRE1Bprovided by VGNC
Official Full Name
DNA cross-link repair 1Bprovided by VGNC
Primary source
VGNC:VGNC:71647
Locus tag
EGK_01115
See related
Ensembl:ENSMMUG00000019527
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See DCLRE1B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (110299988..110307193, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (114948809..114957501)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene olfactomedin like 3 Neighboring gene homeodomain interacting protein kinase 1 Neighboring gene adaptor related protein complex 4 subunit beta 1 Neighboring gene BCL2 like 15 Neighboring gene protein tyrosine phosphatase non-receptor type 22 Neighboring gene uncharacterized LOC107000335

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protection from non-homologous end joining at telomere IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5' exonuclease Apollo
Names
DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    110299988..110307193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001110949.4 → XP_001110949.2  5' exonuclease Apollo isoform X1

    UniProtKB/TrEMBL
    F7CS31, G7MIJ4, H9FYK7
    Related
    ENSMMUP00000025653.3, ENSMMUT00000027430.4
    Conserved Domains (3) summary
    cd11662
    Location:496 → 529
    apollo_TRF2_binding; TRF2-binding region of apollo and similar proteins
    cd16273
    Location:6 → 151
    SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
    pfam07522
    Location:216 → 299
    DRMBL; DNA repair metallo-beta-lactamase

  2. XM_028830306.1 → XP_028686139.1  5' exonuclease Apollo isoform X2

    Conserved Domains (3) summary
    cd11662
    Location:370 → 403
    apollo_TRF2_binding; TRF2-binding region of apollo and similar proteins
    pfam07522
    Location:90 → 173
    DRMBL; DNA repair metallo-beta-lactamase
    cl23716
    Location:1 → 25
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
Heading Accession and Version

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