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ZKSCAN3 zinc finger with KRAB and SCAN domains 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707581, updated on 17-Aug-2024

Summary

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Official Symbol
ZKSCAN3provided by VGNC
Official Full Name
zinc finger with KRAB and SCAN domains 3provided by VGNC
Primary source
VGNC:VGNC:78938
See related
Ensembl:ENSMMUG00000018054
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
ZNF306
Orthologs
human all
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Genomic context

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See ZKSCAN3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (141881745..141898379, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (28770230..28787889)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677654 Neighboring gene uncharacterized LOC106997870 Neighboring gene zinc finger and SCAN domain containing 12 Neighboring gene zinc finger and SCAN domain containing 31 Neighboring gene small integral membrane protein 15-like Neighboring gene piggyBac transposable element derived 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 3
Names
zinc finger protein 306

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    141881745..141898379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028847752.1 → XP_028703585.1  zinc finger protein with KRAB and SCAN domains 3 isoform X1

    UniProtKB/TrEMBL
    F7EGB2, G7MRB2
    Related
    ENSMMUP00000009487.3, ENSMMUT00000010106.4
    Conserved Domains (6) summary
    smart00431
    Location:42 → 154
    SCAN; leucine rich region
    COG5048
    Location:399 → 546
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:345 → 367
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:360 → 382
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:214 → 257
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_001100960.3 → XP_001100960.1  zinc finger protein with KRAB and SCAN domains 3 isoform X2

    See identical proteins and their annotated locations for XP_001100960.1

    UniProtKB/TrEMBL
    A0A5F7ZY50, G7MRB2
    Related
    ENSMMUP00000070559.1, ENSMMUT00000084318.1
    Conserved Domains (8) summary
    smart00431
    Location:42 → 154
    SCAN; leucine rich region
    smart00349
    Location:214 → 274
    KRAB; krueppel associated box
    COG5048
    Location:368 → 515
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:372 → 392
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:314 → 336
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:217 → 252
    KRAB; KRAB box
    pfam02023
    Location:42 → 130
    SCAN; SCAN domain
    pfam13465
    Location:384 → 409
    zf-H2C2_2; Zinc-finger double domain

  3. XM_028847751.1 → XP_028703584.1  zinc finger protein with KRAB and SCAN domains 3 isoform X1

    UniProtKB/TrEMBL
    F7EGB2, G7MRB2
    Conserved Domains (6) summary
    smart00431
    Location:42 → 154
    SCAN; leucine rich region
    COG5048
    Location:399 → 546
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:345 → 367
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:360 → 382
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:214 → 257
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein
Heading Accession and Version

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