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TRIM13 tripartite motif containing 13 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707239, updated on 17-Aug-2024

Summary

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Official Symbol
TRIM13provided by VGNC
Official Full Name
tripartite motif containing 13provided by VGNC
Primary source
VGNC:VGNC:79972
See related
Ensembl:ENSMMUG00000010898
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TRIM13 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (28390630..28466389)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (29287257..29363119)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114673549 Neighboring gene cTAGE family member 2-like Neighboring gene SPRY domain containing 7 Neighboring gene uncharacterized LOC114673551 Neighboring gene microRNA mir-7194 Neighboring gene potassium channel regulator Neighboring gene microRNA mir-16-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    28390630..28466389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015121093.2 → XP_014976579.2  E3 ubiquitin-protein ligase TRIM13

    UniProtKB/TrEMBL
    F7FSH5, F7FSI3
    Related
    ENSMMUP00000014297.3, ENSMMUT00000015255.4
    Conserved Domains (3) summary
    smart00336
    Location:90 → 131
    BBOX; B-Box-type zinc finger
    pfam12252
    Location:163 → 234
    SidE; Dot/Icm substrate protein
    cd16762
    Location:5 → 61
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

  2. XM_002800768.3 → XP_002800814.2  E3 ubiquitin-protein ligase TRIM13

    UniProtKB/TrEMBL
    F7FSH5, F7FSI3
    Related
    ENSMMUP00000014298.3, ENSMMUT00000015256.4
    Conserved Domains (3) summary
    smart00336
    Location:90 → 131
    BBOX; B-Box-type zinc finger
    pfam12252
    Location:163 → 234
    SidE; Dot/Icm substrate protein
    cd16762
    Location:5 → 61
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

  3. XM_015121091.2 → XP_014976577.2  E3 ubiquitin-protein ligase TRIM13

    UniProtKB/TrEMBL
    F7FSH5, F7FSI3
    Conserved Domains (3) summary
    smart00336
    Location:90 → 131
    BBOX; B-Box-type zinc finger
    pfam12252
    Location:163 → 234
    SidE; Dot/Icm substrate protein
    cd16762
    Location:5 → 61
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

  4. XM_015121092.2 → XP_014976578.2  E3 ubiquitin-protein ligase TRIM13

    UniProtKB/TrEMBL
    F7FSH5, F7FSI3
    Related
    ENSMMUP00000067819.1, ENSMMUT00000093966.1
    Conserved Domains (3) summary
    smart00336
    Location:90 → 131
    BBOX; B-Box-type zinc finger
    pfam12252
    Location:163 → 234
    SidE; Dot/Icm substrate protein
    cd16762
    Location:5 → 61
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

  5. XM_028837505.1 → XP_028693338.1  E3 ubiquitin-protein ligase TRIM13

    UniProtKB/TrEMBL
    F7FSH5, F7FSI3
    Conserved Domains (3) summary
    smart00336
    Location:90 → 131
    BBOX; B-Box-type zinc finger
    pfam12252
    Location:163 → 234
    SidE; Dot/Icm substrate protein
    cd16762
    Location:5 → 61
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

  6. XM_028837507.1 → XP_028693340.1  E3 ubiquitin-protein ligase TRIM13

    UniProtKB/TrEMBL
    F7FSH5, F7FSI3
    Conserved Domains (3) summary
    smart00336
    Location:90 → 131
    BBOX; B-Box-type zinc finger
    pfam12252
    Location:163 → 234
    SidE; Dot/Icm substrate protein
    cd16762
    Location:5 → 61
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
Nucleotide Protein
Heading Accession and Version

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