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SOX5 SRY-box transcription factor 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707116, updated on 17-Aug-2024

Summary

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Official Symbol
SOX5provided by VGNC
Official Full Name
SRY-box transcription factor 5provided by VGNC
Primary source
VGNC:VGNC:77843
Locus tag
EGK_03461
See related
Ensembl:ENSMMUG00000020370
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SOX5 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
28
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (24811802..25853531, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (24443959..25478660, complement)

Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107000813 Neighboring gene ferritin, heavy polypeptide 1-like Neighboring gene uncharacterized LOC107000795 Neighboring gene lysine-rich nucleolar protein 1-like Neighboring gene uncharacterized LOC107000796

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-5
Names
SRY (sex determining region Y)-box 5
SRY-box 5
Transcription factor SOX-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041764.1 Reference Mmul_10 Primary Assembly

    Range
    24811802..25853531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028829333.1 → XP_028685166.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  2. XM_015151278.2 → XP_015006764.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  3. XM_028829319.1 → XP_028685152.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  4. XM_028829335.1 → XP_028685168.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  5. XM_015151284.2 → XP_015006770.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  6. XM_028829334.1 → XP_028685167.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  7. XM_028829332.1 → XP_028685165.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  8. XM_015151277.2 → XP_015006763.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  9. XM_028829328.1 → XP_028685161.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  10. XM_028829318.1 → XP_028685151.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  11. XM_028829325.1 → XP_028685158.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  12. XM_028829330.1 → XP_028685163.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  13. XM_028829324.1 → XP_028685157.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  14. XM_028829329.1 → XP_028685162.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  15. XM_028829323.1 → XP_028685156.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  16. XM_028829326.1 → XP_028685159.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  17. XM_001100738.4 → XP_001100738.1  transcription factor SOX-5 isoform X4

    See identical proteins and their annotated locations for XP_001100738.1

    UniProtKB/TrEMBL
    A0A1D5Q680, A0A1D5R0L9
    Related
    ENSMMUP00000043546.2, ENSMMUT00000058345.2
    Conserved Domains (1) summary
    cd01388
    Location:542 → 613
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  18. XM_028829337.1 → XP_028685170.1  transcription factor SOX-5 isoform X7

    UniProtKB/TrEMBL
    H9FBX2
    Conserved Domains (1) summary
    cd01388
    Location:508 → 579
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  19. XM_028829320.1 → XP_028685153.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  20. XM_028829327.1 → XP_028685160.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  21. XM_028829322.1 → XP_028685155.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  22. XM_028829321.1 → XP_028685154.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  23. XM_015151285.2 → XP_015006771.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  24. XM_028829336.1 → XP_028685169.1  transcription factor SOX-5 isoform X3

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:543 → 614
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  25. XM_001100817.3 → XP_001100817.2  transcription factor SOX-5 isoform X2

    See identical proteins and their annotated locations for XP_001100817.2

    UniProtKB/TrEMBL
    A0A1D5R0L9, A0A5S6RBW7, A0A8J8YH01, F7A6U3, G7N6I6
    Related
    ENSMMUP00000040088.3, ENSMMUT00000047058.3
    Conserved Domains (1) summary
    cd01388
    Location:555 → 626
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  26. XM_015151276.2 → XP_015006762.1  transcription factor SOX-5 isoform X1

    UniProtKB/TrEMBL
    A0A1D5R0L9
    Conserved Domains (1) summary
    cd01388
    Location:556 → 627
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  27. XM_015151287.2 → XP_015006773.1  transcription factor SOX-5 isoform X5

    UniProtKB/TrEMBL
    H9FBX2
    Conserved Domains (1) summary
    cd01388
    Location:521 → 592
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  28. XM_015151288.2 → XP_015006774.1  transcription factor SOX-5 isoform X6

    UniProtKB/TrEMBL
    H9FBX2
    Conserved Domains (1) summary
    cd01388
    Location:520 → 591
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
Nucleotide Protein
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