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FUBP1 far upstream element binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707102, updated on 17-Aug-2024

Summary

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Official Symbol
FUBP1provided by VGNC
Official Full Name
far upstream element binding protein 1provided by VGNC
Primary source
VGNC:VGNC:99956
See related
Ensembl:ENSMMUG00000002899
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See FUBP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (146413885..146453583)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (77994076..78033835, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene GIPC PDZ domain containing family member 2 Neighboring gene translocon-associated protein subunit gamma pseudogene Neighboring gene omega-amidase NIT2 pseudogene Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene nexilin F-actin binding protein Neighboring gene putative uncharacterized protein NEXN-AS1 Neighboring gene nuclear speckle splicing regulatory protein 1 pseudogene Neighboring gene mitoguardin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    146413885..146453583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015143099.2 → XP_014998585.1  far upstream element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    F7HB87
    Conserved Domains (5) summary
    pfam09005
    Location:623 → 643
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  2. XM_015143133.2 → XP_014998619.1  far upstream element-binding protein 1 isoform X8

    UniProtKB/TrEMBL
    F7HB87, H9G1C9
    Related
    ENSMMUP00000067630.1, ENSMMUT00000081936.1
    Conserved Domains (2) summary
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:98 → 172
    KH-I; K homology (KH) RNA-binding domain, type I

  3. XM_015143122.2 → XP_014998608.1  far upstream element-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    F7HB87
    Conserved Domains (5) summary
    pfam09005
    Location:601 → 621
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  4. XM_028832274.1 → XP_028688107.1  far upstream element-binding protein 1 isoform X9

    UniProtKB/TrEMBL
    F7HB87, H9ZEV7
    Related
    ENSMMUP00000048143.2, ENSMMUT00000069299.2
    Conserved Domains (5) summary
    pfam09005
    Location:601 → 621
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  5. XM_015143080.2 → XP_014998566.1  far upstream element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    F7HB87
    Conserved Domains (5) summary
    pfam09005
    Location:623 → 643
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  6. XM_015143112.2 → XP_014998598.1  far upstream element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    F7HB87
    Conserved Domains (5) summary
    pfam09005
    Location:623 → 643
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  7. XM_028832256.1 → XP_028688089.1  far upstream element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    F7HB87
    Conserved Domains (5) summary
    pfam09005
    Location:622 → 642
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:118 → 192
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:206 → 275
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:296 → 363
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:396 → 467
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  8. XM_028832263.1 → XP_028688096.1  far upstream element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A1D5QLH1, F7HB87
    Related
    ENSMMUP00000048896.2, ENSMMUT00000064940.2
    Conserved Domains (5) summary
    pfam09005
    Location:622 → 642
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:118 → 192
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:206 → 275
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:296 → 363
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:396 → 467
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  9. XM_028832265.1 → XP_028688098.1  far upstream element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    F7HB87, G7MHS0
    Conserved Domains (5) summary
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:98 → 172
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:186 → 255
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:276 → 343
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:376 → 447
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  10. XM_028832279.1 → XP_028688112.1  far upstream element-binding protein 1 isoform X10

    UniProtKB/TrEMBL
    F7HB87
    Conserved Domains (3) summary
    cd00105
    Location:214 → 275
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:538 → 558
    DUF1897; Domain of unknown function (DUF1897)
    pfam00013
    Location:39 → 102
    KH_1; KH domain

RNA

  1. XR_003722041.1 RNA Sequence

  2. XR_001446119.2 RNA Sequence

  3. XR_003722046.1 RNA Sequence

  4. XR_003722011.1 RNA Sequence

  5. XR_001446113.2 RNA Sequence

  6. XR_001446115.2 RNA Sequence

  7. XR_001446112.2 RNA Sequence

  8. XR_001446114.2 RNA Sequence

  9. XR_001446116.2 RNA Sequence

  10. XR_003722028.1 RNA Sequence

  11. XR_001446118.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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