U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAPN13 calpain 13 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706966, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
CAPN13provided by VGNC
Official Full Name
calpain 13provided by VGNC
Primary source
VGNC:VGNC:70571
See related
Ensembl:ENSMMUG00000003473
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CAPN13 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (78074312..78185512)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (31133054..31245649, complement)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106992891 Neighboring gene uncharacterized LOC114671741 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 14 Neighboring gene uncharacterized LOC106992890 Neighboring gene lysocardiolipin acyltransferase 1 Neighboring gene LBH regulator of WNT signaling pathway

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-13

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    78074312..78185512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015112043.2 → XP_014967529.2  calpain-13

    UniProtKB/TrEMBL
    F7EBC1, G7N9R9
    Related
    ENSMMUP00000004631.4, ENSMMUT00000004916.4
    Conserved Domains (3) summary
    cd16195
    Location:501 → 669
    EFh_PEF_CAPN13_14; Penta-EF hand, calcium binding motifs, found in calpain-13 (CAPN13), calpain-14 (CAPN14), and similar proteins
    pfam00648
    Location:35 → 331
    Peptidase_C2; Calpain family cysteine protease
    cl00165
    Location:359 → 474
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

  2. XM_015112042.2 → XP_014967528.2  calpain-13

    UniProtKB/TrEMBL
    F7EBC1, G7N9R9
    Conserved Domains (3) summary
    cd16195
    Location:501 → 669
    EFh_PEF_CAPN13_14; Penta-EF hand, calcium binding motifs, found in calpain-13 (CAPN13), calpain-14 (CAPN14), and similar proteins
    pfam00648
    Location:35 → 331
    Peptidase_C2; Calpain family cysteine protease
    cl00165
    Location:359 → 474
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

  3. XM_028831804.1 → XP_028687637.1  calpain-13

    UniProtKB/TrEMBL
    F7EBC1, G7N9R9
    Conserved Domains (3) summary
    cd16195
    Location:501 → 669
    EFh_PEF_CAPN13_14; Penta-EF hand, calcium binding motifs, found in calpain-13 (CAPN13), calpain-14 (CAPN14), and similar proteins
    pfam00648
    Location:35 → 331
    Peptidase_C2; Calpain family cysteine protease
    cl00165
    Location:359 → 474
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

RNA

  1. XR_001438997.2 RNA Sequence

  2. XR_003721800.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials