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ZKSCAN4 zinc finger with KRAB and SCAN domains 4 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706745, updated on 17-Aug-2024

Summary

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Official Symbol
ZKSCAN4provided by VGNC
Official Full Name
zinc finger with KRAB and SCAN domains 4provided by VGNC
Primary source
VGNC:VGNC:104441
Locus tag
EGK_14617
See related
Ensembl:ENSMMUG00000054954
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ZKSCAN4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (142016124..142027568)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (28642166..28653632, complement)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 26 Neighboring gene NFKB activating protein like Neighboring gene zinc finger and SCAN domain containing 9 Neighboring gene protein Tob2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 4
Names
Zinc finger protein 307

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    142016124..142027568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028847755.1 → XP_028703588.1  zinc finger protein with KRAB and SCAN domains 4 isoform X2

    UniProtKB/TrEMBL
    H9YWZ1
    Conserved Domains (6) summary
    COG5048
    Location:345 → 509
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:349 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:291 → 313
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:306 → 328
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:192 → 254
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    cl02605
    Location:49 → 131
    SCAN; SCAN oligomerization domain

  2. XM_028847756.1 → XP_028703589.1  zinc finger protein with KRAB and SCAN domains 4 isoform X3

    UniProtKB/TrEMBL
    H9F3F7, H9F483
    Conserved Domains (5) summary
    COG5048
    Location:271 → 435
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:275 → 295
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:217 → 239
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:232 → 254
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:118 → 180
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  3. XM_015135795.2 → XP_014991281.2  zinc finger protein with KRAB and SCAN domains 4 isoform X1

    UniProtKB/TrEMBL
    A0A5F8ACZ6, H9YWZ1
    Related
    ENSMMUP00000075745.1, ENSMMUT00000092502.1
    Conserved Domains (6) summary
    smart00431
    Location:49 → 160
    SCAN; leucine rich region
    COG5048
    Location:374 → 538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 398
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:320 → 342
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:335 → 357
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:221 → 283
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  4. XM_015135796.2 → XP_014991282.1  zinc finger protein with KRAB and SCAN domains 4 isoform X4

    UniProtKB/TrEMBL
    H9F3F7, H9F483
    Conserved Domains (6) summary
    smart00349
    Location:71 → 133
    KRAB; krueppel associated box
    COG5048
    Location:224 → 388
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:228 → 248
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:282 → 304
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:74 → 109
    KRAB; KRAB box
    pfam13465
    Location:240 → 265
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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