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TFDP3 transcription factor Dp family member 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706557, updated on 17-Aug-2024

Summary

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Official Symbol
TFDP3provided by VGNC
Official Full Name
transcription factor Dp family member 3provided by VGNC
Primary source
VGNC:VGNC:79443
Locus tag
EGK_20944
See related
Ensembl:ENSMMUG00000017335
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human all
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Genomic context

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See TFDP3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (129477053..129478768, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (127177823..127179504, complement)

Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 26 Neighboring gene small nucleolar RNA SNORA8 Neighboring gene U1 spliceosomal RNA Neighboring gene glypican 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Dp family member 3
Names
Hepatocellular carcinoma-associated antigen 661

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041774.1 Reference Mmul_10 Primary Assembly

    Range
    129477053..129478768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001097146.4 → XP_001097146.1  transcription factor Dp family member 3

    See identical proteins and their annotated locations for XP_001097146.1

    UniProtKB/TrEMBL
    A0A663D897, A0A8J8XSQ2, F7HDM2, G7NRL4
    Related
    ENSMMUP00000022809.3, ENSMMUT00000024370.4
    Conserved Domains (3) summary
    cd14458
    Location:193 → 239
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:108 → 188
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:195 → 334
    DP; Transcription factor DP
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials