U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

USP16 ubiquitin specific peptidase 16 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706403, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
USP16provided by VGNC
Official Full Name
ubiquitin specific peptidase 16provided by VGNC
Primary source
VGNC:VGNC:78738
See related
Ensembl:ENSMMUG00000003020
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See USP16 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (17615704..17645893, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (17825636..17855988, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene MAP3K7 C-terminal like Neighboring gene chaperonin containing TCP1 subunit 8 Neighboring gene 60S ribosomal protein L23 pseudogene Neighboring gene RWD domain containing 2B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin carboxyl-terminal hydrolase 16
NP_001247928.1
XP_014988537.2
XP_014988538.2
XP_028700780.1
XP_028700781.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260999.2 → NP_001247928.1  ubiquitin carboxyl-terminal hydrolase 16

    See identical proteins and their annotated locations for NP_001247928.1

    Status: PROVISIONAL

    Source sequence(s)
    JV045950
    UniProtKB/TrEMBL
    F6VN92, I0FNJ5
    Related
    ENSMMUP00000080499.1, ENSMMUT00000110352.1
    Conserved Domains (4) summary
    COG5207
    Location:68 → 333
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02667
    Location:626 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:197 → 402
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam02148
    Location:63 → 123
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    17615704..17645893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015133052.2 → XP_014988538.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X2

    UniProtKB/TrEMBL
    F6VN92
    Conserved Domains (3) summary
    COG5207
    Location:68 → 332
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02667
    Location:625 → 822
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:48 → 123
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  2. XM_015133051.2 → XP_014988537.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/TrEMBL
    A0A5F8ASW1, F6VN92
    Related
    ENSMMUP00000004034.3, ENSMMUT00000004279.4
    Conserved Domains (3) summary
    COG5207
    Location:68 → 333
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02667
    Location:626 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:48 → 123
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  3. XM_028844948.1 → XP_028700781.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/TrEMBL
    A0A5F8ASW1, F6VN92
    Conserved Domains (3) summary
    COG5207
    Location:68 → 333
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02667
    Location:626 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:48 → 123
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  4. XM_028844947.1 → XP_028700780.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/TrEMBL
    A0A5F8ASW1, F6VN92
    Related
    ENSMMUP00000073779.1, ENSMMUT00000109624.1
    Conserved Domains (3) summary
    COG5207
    Location:68 → 333
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02667
    Location:626 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:48 → 123
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials