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PEF1 penta-EF-hand domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706038, updated on 5-Mar-2024

Summary

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Gene symbol
PEF1
Gene description
penta-EF-hand domain containing 1
See related
Ensembl:ENSMMUG00000023397
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PEF1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (193024389..193039708)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (30682777..30698099, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997348 Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene collagen type XVI alpha 1 chain Neighboring gene hypocretin receptor 1 Neighboring gene dnaJ homolog subfamily C member 8 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peflin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    193024389..193039708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001100003.4 → XP_001100003.1  peflin isoform X1

    See identical proteins and their annotated locations for XP_001100003.1

    UniProtKB/TrEMBL
    A0A1D5RHL4, F7FE57, G7MI76
    Related
    ENSMMUP00000030803.2, ENSMMUT00000032920.4
    Conserved Domains (3) summary
    cd00051
    Location:122 → 180
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:122 → 178
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:186 → 277
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_028836747.1 → XP_028692580.1  peflin isoform X2

    Conserved Domains (1) summary
    cd16184
    Location:48 → 213
    EFh_PEF_peflin; EF-hand, calcium binding motif, found in peflin and similar proteins

  3. XM_028836751.1 → XP_028692584.1  peflin isoform X2

    Conserved Domains (1) summary
    cd16184
    Location:48 → 213
    EFh_PEF_peflin; EF-hand, calcium binding motif, found in peflin and similar proteins

  4. XM_028836759.1 → XP_028692592.1  peflin isoform X2

    Conserved Domains (1) summary
    cd16184
    Location:48 → 213
    EFh_PEF_peflin; EF-hand, calcium binding motif, found in peflin and similar proteins

RNA

  1. XR_001443661.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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