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ATRX ATRX chromatin remodeler [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 705735, updated on 17-Aug-2024

Summary

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Official Symbol
ATRXprovided by VGNC
Official Full Name
ATRX chromatin remodelerprovided by VGNC
Primary source
VGNC:VGNC:70195
See related
Ensembl:ENSMMUG00000022574
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATRX in Genome Data Viewer
Location:
chromosome: X
Exon count:
36
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (74196331..74480944, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (71306511..71595897, complement)

Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene SPRY domain-containing protein 7-like Neighboring gene uncharacterized LOC114674886 Neighboring gene fibroblast growth factor 16 Neighboring gene U6 spliceosomal RNA Neighboring gene magnesium transporter 1 Neighboring gene cytochrome c oxidase subunit 7B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional regulator ATRX
XP_001099769.2
XP_001099874.2
XP_014983197.1
XP_014983198.1
XP_014983199.1
XP_014983200.1
XP_014983201.1
XP_014983202.1
XP_014983203.1
XP_014983204.1
XP_028698346.1
XP_028698347.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041774.1 Reference Mmul_10 Primary Assembly

    Range
    74196331..74480944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001099769.4 → XP_001099769.2  transcriptional regulator ATRX isoform X4

    UniProtKB/TrEMBL
    H9ZAD4
    Conserved Domains (4) summary
    cd00046
    Location:1548 → 1710
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:1977 → 2123
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:129 → 232
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1523 → 1849
    SNF2_N; SNF2 family N-terminal domain

  2. XM_028842513.1 → XP_028698346.1  transcriptional regulator ATRX isoform X8

    UniProtKB/TrEMBL
    A0A5F8A4B1
    Conserved Domains (5) summary
    PTZ00121
    Location:793 → 1391
    PTZ00121; MAEBL; Provisional
    COG0553
    Location:1474 → 2124
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    PTZ00108
    Location:654 → 857
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cd11726
    Location:167 → 270
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    cd18068
    Location:1499 → 1742
    DEXHc_ATRX; DEXH-box helicase domain of ATRX

  3. XM_001099874.4 → XP_001099874.2  transcriptional regulator ATRX isoform X1

    UniProtKB/TrEMBL
    F6ZEI1, F6ZEY8, H9ZAD4
    Related
    ENSMMUP00000029720.4, ENSMMUT00000031765.4
    Conserved Domains (4) summary
    cd00046
    Location:1586 → 1748
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:2015 → 2161
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:167 → 270
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1561 → 1887
    SNF2_N; SNF2 family N-terminal domain

  4. XM_015127717.2 → XP_014983203.1  transcriptional regulator ATRX isoform X9

    UniProtKB/TrEMBL
    A0A5F8AI56
    Related
    ENSMMUP00000077585.1, ENSMMUT00000107563.1
    Conserved Domains (4) summary
    cd00046
    Location:1518 → 1680
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:1947 → 2093
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:128 → 231
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1493 → 1819
    SNF2_N; SNF2 family N-terminal domain

  5. XM_015127714.2 → XP_014983200.1  transcriptional regulator ATRX isoform X6

    UniProtKB/TrEMBL
    H9ZAD4
    Related
    ENSMMUP00000029719.4, ENSMMUT00000031764.4
    Conserved Domains (4) summary
    cd00046
    Location:1547 → 1709
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:1976 → 2122
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:128 → 231
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1522 → 1848
    SNF2_N; SNF2 family N-terminal domain

  6. XM_015127711.2 → XP_014983197.1  transcriptional regulator ATRX isoform X2

    UniProtKB/TrEMBL
    F6ZEY8, H9ZAD4
    Conserved Domains (4) summary
    cd00046
    Location:1585 → 1747
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:2014 → 2160
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:166 → 269
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1560 → 1886
    SNF2_N; SNF2 family N-terminal domain

  7. XM_015127712.2 → XP_014983198.1  transcriptional regulator ATRX isoform X3

    UniProtKB/TrEMBL
    F6UJ05, F6ZEY8
    Related
    ENSMMUP00000040966.3, ENSMMUT00000047933.3
    Conserved Domains (4) summary
    cd00046
    Location:1557 → 1719
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:1986 → 2132
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:167 → 270
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1532 → 1858
    SNF2_N; SNF2 family N-terminal domain

  8. XM_015127713.2 → XP_014983199.1  transcriptional regulator ATRX isoform X5

    UniProtKB/TrEMBL
    F6ZEY8
    Conserved Domains (4) summary
    cd00046
    Location:1547 → 1709
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:1976 → 2122
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:128 → 231
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1522 → 1848
    SNF2_N; SNF2 family N-terminal domain

  9. XM_015127718.2 → XP_014983204.1  transcriptional regulator ATRX isoform X11

    UniProtKB/TrEMBL
    H9ZAD4
    Conserved Domains (5) summary
    cd00079
    Location:1922 → 2068
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd11726
    Location:74 → 177
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    pfam00176
    Location:1468 → 1794
    SNF2_N; SNF2 family N-terminal domain
    cl25574
    Location:561 → 764
    TOP2c; TopoisomeraseII
    cl26511
    Location:700 → 1339
    Neuromodulin_N; Gap junction protein N-terminal region

  10. XM_028842514.1 → XP_028698347.1  transcriptional regulator ATRX isoform X10

    UniProtKB/TrEMBL
    F6ZEY8
    Conserved Domains (5) summary
    PTZ00121
    Location:709 → 1348
    PTZ00121; MAEBL; Provisional
    COG0553
    Location:1449 → 2099
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    PTZ00108
    Location:570 → 773
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cd11726
    Location:112 → 215
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    cd18068
    Location:1474 → 1717
    DEXHc_ATRX; DEXH-box helicase domain of ATRX

  11. XM_015127716.2 → XP_014983202.1  transcriptional regulator ATRX isoform X7

    UniProtKB/TrEMBL
    F6ZEY8
    Conserved Domains (5) summary
    PTZ00121
    Location:738 → 1377
    PTZ00121; MAEBL; Provisional
    COG0553
    Location:1478 → 2128
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    PTZ00108
    Location:599 → 802
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cd11726
    Location:112 → 215
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    cd18068
    Location:1503 → 1746
    DEXHc_ATRX; DEXH-box helicase domain of ATRX

  12. XM_015127715.2 → XP_014983201.1  transcriptional regulator ATRX isoform X7

    UniProtKB/TrEMBL
    F6ZEY8
    Conserved Domains (5) summary
    PTZ00121
    Location:738 → 1377
    PTZ00121; MAEBL; Provisional
    COG0553
    Location:1478 → 2128
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    PTZ00108
    Location:599 → 802
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cd11726
    Location:112 → 215
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    cd18068
    Location:1503 → 1746
    DEXHc_ATRX; DEXH-box helicase domain of ATRX
Nucleotide Protein
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