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UTP4 UTP4 small subunit processome component [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 705036, updated on 17-Aug-2024

Summary

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Official Symbol
UTP4provided by VGNC
Official Full Name
UTP4 small subunit processome componentprovided by VGNC
Primary source
VGNC:VGNC:79204
See related
Ensembl:ENSMMUG00000022841
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
CIRH1A; cirhin
Orthologs
human mouse all
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Genomic context

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See UTP4 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (56383027..56421512)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (53559595..53598468)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 6 homolog Neighboring gene deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like Neighboring gene hyaluronan synthase 3 Neighboring gene DERPC proline and glycine rich nuclear protein Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene syntrophin beta 2 Neighboring gene vacuolar protein sorting 4 homolog A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of t-UTP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 4 homolog
Names
cirrhosis, autosomal recessive 1A (cirhin)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    56383027..56421512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028840817.1 → XP_028696650.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5RGB9, G7NQL6, H9EV88
    Related
    ENSMMUP00000030083.4, ENSMMUT00000032154.4
    Conserved Domains (2) summary
    sd00039
    Location:20 → 57
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:16 → 306
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_028840816.1 → XP_028696649.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X2

    UniProtKB/TrEMBL
    F6UFB4, G7NQL6
    Related
    ENSMMUP00000030082.4, ENSMMUT00000032153.4
    Conserved Domains (3) summary
    COG2319
    Location:94 → 531
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:21 → 57
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:16 → 281
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_015126490.2 → XP_014981976.2  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5RGB9, G7NQL6, H9EV88
    Related
    ENSMMUP00000059363.2, ENSMMUT00000055428.2
    Conserved Domains (2) summary
    sd00039
    Location:20 → 57
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:16 → 306
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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