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SLITRK5 SLIT and NTRK like family member 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 705032, updated on 17-Aug-2024

Summary

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Official Symbol
SLITRK5provided by VGNC
Official Full Name
SLIT and NTRK like family member 5provided by VGNC
Primary source
VGNC:VGNC:77743
Locus tag
EGK_09399
See related
Ensembl:ENSMMUG00000002854
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SLITRK5 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (69409549..69463646)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (69118006..69126412)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene protein lin-28 homolog A pseudogene Neighboring gene uncharacterized LOC106994319 Neighboring gene uncharacterized LOC114673421 Neighboring gene uncharacterized LOC106994320

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 5
Names
Leucine-rich repeat-containing protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265627.1 → NP_001252556.1  SLIT and NTRK-like protein 5

    See identical proteins and their annotated locations for NP_001252556.1

    Status: PROVISIONAL

    Source sequence(s)
    JV565098
    UniProtKB/TrEMBL
    A0A8J8YH24, F7HHZ1, G7NJH4
    Related
    ENSMMUP00000003819.2, ENSMMUT00000004045.4
    Conserved Domains (6) summary
    COG4886
    Location:72 → 319
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:435 → 458
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:62 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:129 → 189
    LRR_8; Leucine rich repeat
    cd21340
    Location:391 → 563
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:563 → 599
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    69409549..69463646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015121197.2 → XP_014976683.1  SLIT and NTRK-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YH24, F7HHZ1, G7NJH4
    Conserved Domains (6) summary
    COG4886
    Location:72 → 319
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:435 → 458
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:62 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:129 → 189
    LRR_8; Leucine rich repeat
    cd21340
    Location:391 → 563
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:563 → 599
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_015121198.2 → XP_014976684.1  SLIT and NTRK-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YH24, F7HHZ1, G7NJH4
    Conserved Domains (6) summary
    COG4886
    Location:72 → 319
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:435 → 458
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:62 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:129 → 189
    LRR_8; Leucine rich repeat
    cd21340
    Location:391 → 563
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:563 → 599
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  3. XM_015121199.2 → XP_014976685.1  SLIT and NTRK-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YH24, F7HHZ1, G7NJH4
    Conserved Domains (6) summary
    COG4886
    Location:72 → 319
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:435 → 458
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:62 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:129 → 189
    LRR_8; Leucine rich repeat
    cd21340
    Location:391 → 563
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:563 → 599
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

RNA

  1. XR_003724094.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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