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5730405O15Rik RIKEN cDNA 5730405O15 gene [ Mus musculus (house mouse) ]

Gene ID: 70489, updated on 6-Oct-2024

Summary

Official Symbol
5730405O15Rikprovided by MGI
Official Full Name
RIKEN cDNA 5730405O15 geneprovided by MGI
Primary source
MGI:MGI:1917739
See related
Ensembl:ENSMUSG00000087424 AllianceGenome:MGI:1917739
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in genital fat pad adult (RPKM 1.3), bladder adult (RPKM 1.1) and 28 other tissues See more
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Genomic context

See 5730405O15Rik in Genome Data Viewer
Location:
X A1.1; X 7.92 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (12908254..12911534)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (13042015..13045295)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene x_132.1 Neighboring gene RIKEN cDNA 4930500G05 gene Neighboring gene predicted gene, 41890 Neighboring gene STARR-seq mESC enhancer starr_46774 Neighboring gene STARR-seq mESC enhancer starr_46778 Neighboring gene STARR-seq mESC enhancer starr_46779 Neighboring gene STARR-seq mESC enhancer starr_46781 Neighboring gene STARR-positive B cell enhancer mm9_chrX:12648426-12648727 Neighboring gene ubiquitin specific peptidase 9, X chromosome Neighboring gene ribosomal protein L3, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038158.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK017500, AK134096
    Related
    ENSMUST00000130099.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    12908254..12911534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)