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TNRC6B trinucleotide repeat containing adaptor 6B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 704630, updated on 17-Aug-2024

Summary

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Official Symbol
TNRC6Bprovided by VGNC
Official Full Name
trinucleotide repeat containing adaptor 6Bprovided by VGNC
Primary source
VGNC:VGNC:79786
Locus tag
EGK_03069
See related
Ensembl:ENSMMUG00000021345
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TNRC6B in Genome Data Viewer
Location:
chromosome: 10
Exon count:
31
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (11195876..11494347, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (82048518..82348469)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene small G protein signaling modulator 3 Neighboring gene adenylosuccinate lyase Neighboring gene uncharacterized LOC114670353 Neighboring gene 60S ribosomal protein L7-like Neighboring gene microRNA mir-7204 Neighboring gene family with sequence similarity 83 member F Neighboring gene GRB2 related adaptor protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6B protein
Names
trinucleotide repeat containing 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    11195876..11494347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028827691.1 → XP_028683524.1  trinucleotide repeat-containing gene 6B protein isoform X5

    UniProtKB/TrEMBL
    A0A5F8AFV1
    Conserved Domains (4) summary
    pfam10427
    Location:917 → 1048
    Ago_hook; Argonaute hook
    pfam16608
    Location:1342 → 1627
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1629 → 1711
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  2. XM_015150385.2 → XP_015005871.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (4) summary
    pfam10427
    Location:958 → 1101
    Ago_hook; Argonaute hook
    pfam16608
    Location:1395 → 1680
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1682 → 1764
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  3. XM_015150392.2 → XP_015005878.1  trinucleotide repeat-containing gene 6B protein isoform X8

    UniProtKB/TrEMBL
    F7DLE2, H9Z6Q6
    Related
    ENSMMUP00000068152.1, ENSMMUT00000104202.1
    Conserved Domains (3) summary
    cd12712
    Location:1536 → 1618
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:891 → 1002
    Ago_hook; Argonaute hook
    pfam16608
    Location:1249 → 1534
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  4. XM_001101111.4 → XP_001101111.2  trinucleotide repeat-containing gene 6B protein isoform X4

    See identical proteins and their annotated locations for XP_001101111.2

    UniProtKB/TrEMBL
    F6XNN3, H9Z6Q7
    Related
    ENSMMUP00000036987.3, ENSMMUT00000043984.3
    Conserved Domains (3) summary
    cd12712
    Location:1646 → 1728
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:945 → 1055
    Ago_hook; Argonaute hook
    pfam16608
    Location:1359 → 1644
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  5. XM_028827690.1 → XP_028683523.1  trinucleotide repeat-containing gene 6B protein isoform X3

    UniProtKB/TrEMBL
    F6XNM1, G7N3X3
    Related
    ENSMMUP00000071752.1, ENSMMUT00000089850.1
    Conserved Domains (4) summary
    pfam10427
    Location:936 → 1079
    Ago_hook; Argonaute hook
    pfam16608
    Location:1373 → 1658
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1660 → 1742
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:343 → 604
    ser_rich_anae_1; serine-rich protein

  6. XM_015150384.2 → XP_015005870.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (4) summary
    pfam10427
    Location:958 → 1101
    Ago_hook; Argonaute hook
    pfam16608
    Location:1395 → 1680
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1682 → 1764
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  7. XM_028827693.1 → XP_028683526.1  trinucleotide repeat-containing gene 6B protein isoform X7

    UniProtKB/TrEMBL
    A0A5F8AEI7, A0A5F8AFV1
    Related
    ENSMMUP00000076298.1, ENSMMUT00000098602.1
    Conserved Domains (4) summary
    pfam10427
    Location:917 → 1048
    Ago_hook; Argonaute hook
    pfam16608
    Location:1285 → 1570
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1572 → 1654
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  8. XM_028827692.1 → XP_028683525.1  trinucleotide repeat-containing gene 6B protein isoform X6

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (4) summary
    pfam10427
    Location:958 → 1101
    Ago_hook; Argonaute hook
    pfam16608
    Location:1338 → 1623
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1625 → 1707
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  9. XM_028827689.1 → XP_028683522.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (4) summary
    pfam10427
    Location:958 → 1101
    Ago_hook; Argonaute hook
    pfam16608
    Location:1395 → 1680
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1682 → 1764
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  10. XM_028827688.1 → XP_028683521.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (4) summary
    pfam10427
    Location:958 → 1101
    Ago_hook; Argonaute hook
    pfam16608
    Location:1395 → 1680
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1682 → 1764
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  11. XM_028827687.1 → XP_028683520.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (4) summary
    pfam10427
    Location:958 → 1101
    Ago_hook; Argonaute hook
    pfam16608
    Location:1395 → 1680
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cd12712
    Location:1682 → 1764
    RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    NF033849
    Location:365 → 626
    ser_rich_anae_1; serine-rich protein

  12. XM_015150386.2 → XP_015005872.1  trinucleotide repeat-containing gene 6B protein isoform X2

    UniProtKB/TrEMBL
    F6XNM1
    Conserved Domains (3) summary
    cd12712
    Location:1680 → 1762
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:979 → 1089
    Ago_hook; Argonaute hook
    pfam16608
    Location:1393 → 1678
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
Heading Accession and Version

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