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HDAC3 histone deacetylase 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 704467, updated on 17-Aug-2024

Summary

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Official Symbol
HDAC3provided by VGNC
Official Full Name
histone deacetylase 3provided by VGNC
Primary source
VGNC:VGNC:73359
Locus tag
EGK_16958
See related
Ensembl:ENSMMUG00000012588
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HDAC3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (139000766..139018221, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (139395224..139411991, complement)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma-A6 Neighboring gene protocadherin gamma subfamily C, 5 Neighboring gene diaphanous related formin 1 Neighboring gene ubiquitin-40S ribosomal protein S27a pseudogene Neighboring gene FCH and double SH3 domains 1 Neighboring gene RELT like 2 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 3
NP_001253426.1
XP_028705021.1
XP_028705022.1
XP_028705023.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266497.2 → NP_001253426.1  histone deacetylase 3

    See identical proteins and their annotated locations for NP_001253426.1

    Status: PROVISIONAL

    Source sequence(s)
    JV048592
    UniProtKB/TrEMBL
    A0A8J8YMG0, F6V5K8, F7FDY7, G7MVB7, H9G1C1
    Related
    ENSMMUP00000033970.3, ENSMMUT00000040940.3
    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    139000766..139018221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849188.1 → XP_028705021.1  histone deacetylase 3 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AQ67
    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

  2. XM_028849190.1 → XP_028705023.1  histone deacetylase 3 isoform X3

    UniProtKB/TrEMBL
    G7MPX3
    Related
    ENSMMUP00000074707.1, ENSMMUT00000085226.1
    Conserved Domains (1) summary
    cl17011
    Location:1 → 196
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  3. XM_028849189.1 → XP_028705022.1  histone deacetylase 3 isoform X2

    UniProtKB/TrEMBL
    A0A5F8AQ67
    Conserved Domains (1) summary
    cl17011
    Location:12 → 300
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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