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CARF calcium responsive transcription factor [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 704415, updated on 17-Aug-2024

Summary

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Official Symbol
CARFprovided by VGNC
Official Full Name
calcium responsive transcription factorprovided by VGNC
Primary source
VGNC:VGNC:70518
See related
Ensembl:ENSMMUG00000006418
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CARF in Genome Data Viewer
Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (90282043..90369347)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (84574795..84662195)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1 like Neighboring gene keratin, type II cytoskeletal 8 pseudogene Neighboring gene WD repeat domain 12 Neighboring gene UPF0729 protein C18orf32 homolog pseudogene Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene neurobeachin like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-responsive transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    90282043..90369347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015110688.2 → XP_014966174.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    F7HUH6
    Conserved Domains (1) summary
    pfam15299
    Location:253 → 483
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  2. XM_015110692.2 → XP_014966178.1  calcium-responsive transcription factor isoform X2

    UniProtKB/TrEMBL
    F7HUH6
    Conserved Domains (1) summary
    pfam15299
    Location:253 → 457
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  3. XM_015110689.2 → XP_014966175.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    F7HUH6
    Related
    ENSMMUP00000008457.4, ENSMMUT00000008998.4
    Conserved Domains (1) summary
    pfam15299
    Location:253 → 483
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  4. XM_015110690.2 → XP_014966176.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    F7HUH6
    Conserved Domains (1) summary
    pfam15299
    Location:253 → 483
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  5. XM_028830994.1 → XP_028686827.1  calcium-responsive transcription factor isoform X4

    Conserved Domains (1) summary
    pfam15299
    Location:1 → 139
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  6. XM_028830991.1 → XP_028686824.1  calcium-responsive transcription factor isoform X3

    UniProtKB/TrEMBL
    F7HUH6
    Conserved Domains (1) summary
    pfam15299
    Location:149 → 381
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  7. XM_028830992.1 → XP_028686825.1  calcium-responsive transcription factor isoform X3

    UniProtKB/TrEMBL
    F7HUH6
    Conserved Domains (1) summary
    pfam15299
    Location:149 → 381
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

RNA

  1. XR_001438712.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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