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CTNND1 catenin delta 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 704212, updated on 17-Aug-2024

Summary

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Official Symbol
CTNND1provided by VGNC
Official Full Name
catenin delta 1provided by VGNC
Primary source
VGNC:VGNC:71546
Locus tag
EGK_06212
See related
Ensembl:ENSMMUG00000012366
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CTNND1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (15728320..15787476, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (15814011..15885851, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 476-like Neighboring gene olfactory receptor 5B21 Neighboring gene BTB domain containing 18 Neighboring gene selenoprotein H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin delta-1
Names
catenin (cadherin-associated protein), delta 1
p120 catenin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266516.1 → NP_001253445.1  catenin delta-1

    See identical proteins and their annotated locations for NP_001253445.1

    Status: PROVISIONAL

    Source sequence(s)
    JV043580
    UniProtKB/TrEMBL
    F6QHG5, F6QHH2, H9Z094
    Related
    ENSMMUP00000037243.3, ENSMMUT00000044229.3
    Conserved Domains (2) summary
    smart00185
    Location:440 → 481
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    15728320..15787476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028832618.1 → XP_028688451.1  catenin delta-1 isoform X5

    UniProtKB/TrEMBL
    A0A5S6R9P6, A0A8J8YNP2, F6QHF6, G7ND95, H9Z094
    Related
    ENSMMUP00000037244.3, ENSMMUT00000044230.3
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  2. XM_015114110.2 → XP_014969596.2  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  3. XM_028832620.1 → XP_028688453.1  catenin delta-1 isoform X9

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  4. XM_028832617.1 → XP_028688450.1  catenin delta-1 isoform X4

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  5. XM_015114111.2 → XP_014969597.2  catenin delta-1 isoform X6

    UniProtKB/TrEMBL
    H9FQE5, H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:440 → 481
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]

  6. XM_028832616.1 → XP_028688449.1  catenin delta-1 isoform X2

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:440 → 481
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]

  7. XM_015114106.2 → XP_014969592.2  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    F6QHE6, H9Z094
    Related
    ENSMMUP00000037245.3, ENSMMUT00000044231.3
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  8. XM_015114117.2 → XP_014969603.2  catenin delta-1 isoform X13

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  9. XM_015114119.2 → XP_014969605.2  catenin delta-1 isoform X15

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  10. XM_015114116.2 → XP_014969602.2  catenin delta-1 isoform X12

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  11. XM_015114118.2 → XP_014969604.2  catenin delta-1 isoform X14

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  12. XM_015114115.2 → XP_014969601.2  catenin delta-1 isoform X11

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  13. XM_015114112.2 → XP_014969598.2  catenin delta-1 isoform X8

    UniProtKB/TrEMBL
    F6QHG5, F6QHH2, H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:440 → 481
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]

  14. XM_015114113.2 → XP_014969599.2  catenin delta-1 isoform X10

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:386 → 427
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:314 → 339
    ARM; armadillo repeat [structural motif]

  15. XM_015114109.2 → XP_014969595.2  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    F6QHE6, H9Z094
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  16. XM_015114114.2 → XP_014969600.2  catenin delta-1 isoform X10

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:386 → 427
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:314 → 339
    ARM; armadillo repeat [structural motif]

  17. XM_028832615.1 → XP_028688448.1  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    F6QHE6, H9Z094
    Conserved Domains (3) summary
    smart00185
    Location:397 → 437
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:440 → 481
    Arm; Armadillo/beta-catenin-like repeat

  18. XM_028832619.1 → XP_028688452.1  catenin delta-1 isoform X7

    UniProtKB/TrEMBL
    H9Z094
    Conserved Domains (2) summary
    smart00185
    Location:440 → 481
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:368 → 393
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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