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COL4A6 collagen type IV alpha 6 chain [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 703707, updated on 17-Aug-2024

Summary

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Official Symbol
COL4A6provided by VGNC
Official Full Name
collagen type IV alpha 6 chainprovided by VGNC
Primary source
VGNC:VGNC:71300
See related
Ensembl:ENSMMUG00000007205
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See COL4A6 in Genome Data Viewer
Location:
chromosome: X
Exon count:
46
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (104912754..105205760, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (102183411..102480545, complement)

Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 1 Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene collagen type IV alpha 5 chain Neighboring gene insulin receptor substrate 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-6(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041774.1 Reference Mmul_10 Primary Assembly

    Range
    104912754..105205760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001098448.4 → XP_001098448.1  collagen alpha-6(IV) chain isoform X1

    UniProtKB/TrEMBL
    G7NT43
    Related
    ENSMMUP00000009457.4, ENSMMUT00000010076.4
    Conserved Domains (2) summary
    pfam01391
    Location:794 → 851
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1572 → 1684
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_028841866.1 → XP_028697699.1  collagen alpha-6(IV) chain isoform X2

    UniProtKB/TrEMBL
    G7NT43
    Conserved Domains (2) summary
    pfam01391
    Location:794 → 851
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1548 → 1660
    C4; C-terminal tandem repeated domain in type 4 procollagen

  3. XM_028841867.1 → XP_028697700.1  collagen alpha-6(IV) chain isoform X3

    UniProtKB/TrEMBL
    G7NT43
    Conserved Domains (3) summary
    pfam01391
    Location:767 → 824
    Collagen; Collagen triple helix repeat (20 copies)
    pfam05642
    Location:995 → 1217
    Sporozoite_P67; Sporozoite P67 surface antigen
    pfam01413
    Location:1545 → 1657
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

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