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SEMA3B semaphorin 3B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 703553, updated on 17-Aug-2024

Summary

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Official Symbol
SEMA3Bprovided by VGNC
Official Full Name
semaphorin 3Bprovided by VGNC
Primary source
VGNC:VGNC:77160
See related
Ensembl:ENSMMUG00000020117
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SEMA3B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (106389696..106401825)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (92041823..92053975, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 3 Neighboring gene G protein subunit alpha i2 Neighboring gene uncharacterized LOC106996915 Neighboring gene uncharacterized LOC106996914 Neighboring gene leucine rich single-pass membrane protein 2 Neighboring gene interferon related developmental regulator 2 Neighboring gene hyaluronidase 3 Neighboring gene N-alpha-acetyltransferase 80, NatH catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    106389696..106401825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028844148.1 → XP_028699981.1  semaphorin-3B isoform X3

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:515 → 551
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:575 → 665
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 516
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_028844149.1 → XP_028699982.1  semaphorin-3B isoform X4

    UniProtKB/TrEMBL
    F7GI41, F7GI45, G7ML72
    Related
    ENSMMUP00000026483.4, ENSMMUT00000028301.4
    Conserved Domains (3) summary
    smart00423
    Location:514 → 550
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:574 → 664
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 515
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_028844145.1 → XP_028699978.1  semaphorin-3B isoform X1

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:541 → 577
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:601 → 691
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 542
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_028844143.1 → XP_028699976.1  semaphorin-3B isoform X1

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:541 → 577
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:601 → 691
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 542
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_028844147.1 → XP_028699980.1  semaphorin-3B isoform X2

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:540 → 576
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:600 → 690
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 541
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  6. XM_028844144.1 → XP_028699977.1  semaphorin-3B isoform X1

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:541 → 577
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:601 → 691
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 542
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  7. XM_028844151.1 → XP_028699984.1  semaphorin-3B isoform X3

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:515 → 551
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:575 → 665
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 516
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  8. XM_028844150.1 → XP_028699983.1  semaphorin-3B isoform X4

    UniProtKB/TrEMBL
    F7GI41, F7GI45, G7ML72
    Related
    ENSMMUP00000063371.1, ENSMMUT00000106622.1
    Conserved Domains (3) summary
    smart00423
    Location:514 → 550
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:574 → 664
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 515
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  9. XM_028844146.1 → XP_028699979.1  semaphorin-3B isoform X1

    UniProtKB/TrEMBL
    G7ML72
    Conserved Domains (3) summary
    smart00423
    Location:541 → 577
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:601 → 691
    Ig; Immunoglobulin domain
    cl15693
    Location:46 → 542
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  10. XM_028844152.1 → XP_028699985.1  semaphorin-3B isoform X5

    Conserved Domains (3) summary
    smart00423
    Location:348 → 384
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:408 → 498
    Ig; Immunoglobulin domain
    cl15693
    Location:1 → 349
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  11. XM_028844153.1 → XP_028699986.1  semaphorin-3B isoform X6

    Conserved Domains (3) summary
    smart00423
    Location:172 → 208
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:232 → 322
    Ig; Immunoglobulin domain
    cl15693
    Location:1 → 173
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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