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WIPI2 WD repeat domain, phosphoinositide interacting 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 702966, updated on 17-Aug-2024

Summary

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Official Symbol
WIPI2provided by VGNC
Official Full Name
WD repeat domain, phosphoinositide interacting 2provided by VGNC
Primary source
VGNC:VGNC:79918
See related
Ensembl:ENSMMUG00000007045
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See WIPI2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (38281923..38328800)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (39829211..39873596, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene putative speedy protein E7 Neighboring gene RB associated KRAB zinc finger Neighboring gene uncharacterized LOC100430902 Neighboring gene solute carrier family 29 member 4 Neighboring gene trinucleotide repeat containing 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat domain phosphoinositide-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    38281923..38328800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028845087.1 → XP_028700920.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X5

    UniProtKB/TrEMBL
    G7MNM9, H9ES41
    Conserved Domains (2) summary
    COG2319
    Location:21 → 272
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:143 → 182
    7WD40; WD40 repeat [structural motif]

  2. XM_028845088.1 → XP_028700921.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X6

    UniProtKB/TrEMBL
    F7F192, H9ES08
    Related
    ENSMMUP00000073925.1, ENSMMUT00000102965.1
    Conserved Domains (2) summary
    COG2319
    Location:21 → 272
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:143 → 182
    7WD40; WD40 repeat [structural motif]

  3. XM_028845085.1 → XP_028700918.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X3

    UniProtKB/TrEMBL
    G7MNM9, H9YUR2
    Conserved Domains (2) summary
    COG2319
    Location:37 → 290
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:161 → 200
    7WD40; WD40 repeat [structural motif]

  4. XM_028845086.1 → XP_028700919.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X4

    UniProtKB/TrEMBL
    G7MNM9
    Conserved Domains (2) summary
    COG2319
    Location:37 → 290
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:161 → 200
    7WD40; WD40 repeat [structural motif]

  5. XM_028845089.1 → XP_028700922.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X7

    Conserved Domains (2) summary
    sd00039
    Location:17 → 56
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 219
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_028845083.1 → XP_028700916.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A3Z8, G7MNM9
    Related
    ENSMMUP00000072663.1, ENSMMUT00000098744.1
    Conserved Domains (2) summary
    COG2319
    Location:21 → 303
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:174 → 213
    7WD40; WD40 repeat [structural motif]

  7. XM_028845084.1 → XP_028700917.1  WD repeat domain phosphoinositide-interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    F7F192
    Related
    ENSMMUP00000009240.4, ENSMMUT00000009841.4
    Conserved Domains (2) summary
    COG2319
    Location:21 → 303
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:174 → 213
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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