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COL14A1 collagen type XIV alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 702878, updated on 17-Aug-2024

Summary

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Official Symbol
COL14A1provided by VGNC
Official Full Name
collagen type XIV alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:71292
See related
Ensembl:ENSMMUG00000002595
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See COL14A1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
49
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (120403239..120648324)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (119328009..119579675)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114680435 Neighboring gene hsc70-interacting protein pseudogene Neighboring gene mitochondrial ribosomal protein L13 Neighboring gene MDM2 binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in interstitial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XIV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    120403239..120648324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015145924.2 → XP_015001410.2  collagen alpha-1(XIV) chain isoform X1

    UniProtKB/TrEMBL
    A0A5S6RAS2, A0A8J8YCD9, F7HQD9, G7N011
    Related
    ENSMMUP00000003490.4, ENSMMUT00000003696.4
    Conserved Domains (6) summary
    pfam01391
    Location:1480 → 1553
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:447 → 516
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1229 → 1424
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:536 → 621
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1031 → 1195
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:830 → 908
    fn3; Fibronectin type III domain

  2. XM_015145925.2 → XP_015001411.2  collagen alpha-1(XIV) chain isoform X2

    Conserved Domains (6) summary
    pfam01391
    Location:1477 → 1550
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:447 → 516
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1226 → 1421
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:536 → 621
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1028 → 1192
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:827 → 905
    fn3; Fibronectin type III domain

  3. XM_015145926.2 → XP_015001412.2  collagen alpha-1(XIV) chain isoform X3

    Conserved Domains (6) summary
    pfam01391
    Location:1480 → 1553
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:447 → 516
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1229 → 1424
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:536 → 621
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1031 → 1195
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:830 → 908
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

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