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PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 702302, updated on 17-Aug-2024

Summary

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Official Symbol
PHYKPLprovided by VGNC
Official Full Name
5-phosphohydroxy-L-lysine phospho-lyaseprovided by VGNC
Primary source
VGNC:VGNC:81495
See related
Ensembl:ENSMMUG00000003997
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
AGXT2L2
Orthologs
human mouse all
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Genomic context

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See PHYKPL in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (175535306..175562553, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (176693978..176720167, complement)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999057 Neighboring gene germ cell-less 2, spermatogenesis associated Neighboring gene heterogeneous nuclear ribonucleoprotein A/B Neighboring gene collagen type XXIII alpha 1 chain Neighboring gene CDC like kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5-phosphohydroxy-L-lysine phospho-lyase
Names
alanine--glyoxylate aminotransferase 2-like 2
NP_001247859.1
XP_014997044.1
XP_028704999.1
XP_028705000.1
XP_028705001.1
XP_028705002.1
XP_028705003.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260930.2 → NP_001247859.1  5-phosphohydroxy-L-lysine phospho-lyase

    See identical proteins and their annotated locations for NP_001247859.1

    Status: PROVISIONAL

    Source sequence(s)
    JU322930
    UniProtKB/TrEMBL
    F6XR52, H9EWC7
    Related
    ENSMMUP00000005330.4, ENSMMUT00000005663.4
    Conserved Domains (2) summary
    cd00610
    Location:30 → 433
    OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
    COG0160
    Location:12 → 435
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    175535306..175562553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849169.1 → XP_028705002.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X3

    UniProtKB/TrEMBL
    A0A1D5QDS9, F6XR52
    Conserved Domains (1) summary
    PRK06148
    Location:6 → 391
    PRK06148; hypothetical protein; Provisional

  2. XM_028849166.1 → XP_028704999.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X1

    UniProtKB/TrEMBL
    F6XR52
    Conserved Domains (1) summary
    PRK06148
    Location:6 → 433
    PRK06148; hypothetical protein; Provisional

  3. XM_028849168.1 → XP_028705001.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X3

    UniProtKB/TrEMBL
    A0A1D5QDS9, F6XR52
    Related
    ENSMMUP00000046198.2, ENSMMUT00000071094.2
    Conserved Domains (1) summary
    PRK06148
    Location:6 → 391
    PRK06148; hypothetical protein; Provisional

  4. XM_028849170.1 → XP_028705003.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X2

    UniProtKB/TrEMBL
    A0A5F8AD97, G7MUH5
    Conserved Domains (1) summary
    PRK06148
    Location:1 → 392
    PRK06148; hypothetical protein; Provisional

  5. XM_028849167.1 → XP_028705000.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X2

    UniProtKB/TrEMBL
    A0A5F8AD97, G7MUH5
    Related
    ENSMMUP00000074936.1, ENSMMUT00000090574.1
    Conserved Domains (1) summary
    PRK06148
    Location:1 → 392
    PRK06148; hypothetical protein; Provisional

  6. XM_015141558.2 → XP_014997044.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X4

    UniProtKB/TrEMBL
    F6XR52
    Conserved Domains (1) summary
    cd00610
    Location:30 → 360
    OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...

RNA

  1. XR_003730077.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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