U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SLTM SAFB like transcription modulator [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701841, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SLTMprovided by VGNC
Official Full Name
SAFB like transcription modulatorprovided by VGNC
Primary source
VGNC:VGNC:77748
See related
Ensembl:ENSMMUG00000022200
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SLTM in Genome Data Viewer
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (35292921..35349484, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (35438632..35494339, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene MINDY lysine 48 deubiquitinase 2 Neighboring gene uncharacterized LOC114679421 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene ring finger protein 111 Neighboring gene cyclin B2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SAFB-like transcription modulator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    35292921..35349484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015142379.2 → XP_014997865.1  SAFB-like transcription modulator isoform X7

    UniProtKB/TrEMBL
    A0A1D5QIK3
    Conserved Domains (5) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:119 → 623
    PTZ00121; MAEBL; Provisional
    COG0724
    Location:189 → 396
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    PRK12678
    Location:699 → 888
    PRK12678; transcription termination factor Rho; Provisional
    cl17169
    Location:285 → 358
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_015142375.2 → XP_014997861.1  SAFB-like transcription modulator isoform X2

    UniProtKB/TrEMBL
    A0A1D5QIK3, H9FZW9
    Conserved Domains (6) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:145 → 729
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:25 → 168
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    PHA03307
    Location:778 → 1013
    PHA03307; transcriptional regulator ICP4; Provisional
    COG0724
    Location:271 → 478
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:367 → 440
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_015142374.2 → XP_014997860.1  SAFB-like transcription modulator isoform X1

    UniProtKB/TrEMBL
    A0A1D5QIK3, H9FZX0
    Related
    ENSMMUP00000042947.1, ENSMMUT00000069333.2
    Conserved Domains (5) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:34 → 723
    PTZ00121; MAEBL; Provisional
    PHA03307
    Location:796 → 1031
    PHA03307; transcriptional regulator ICP4; Provisional
    COG0724
    Location:289 → 496
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:385 → 458
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_015142376.2 → XP_014997862.1  SAFB-like transcription modulator isoform X3

    UniProtKB/TrEMBL
    A0A1D5QIK3, A0A5F8AGP7
    Related
    ENSMMUP00000076121.1, ENSMMUT00000107123.1
    Conserved Domains (4) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:38 → 723
    PTZ00121; MAEBL; Provisional
    COG0724
    Location:289 → 496
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:385 → 458
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_015142377.2 → XP_014997863.1  SAFB-like transcription modulator isoform X5

    UniProtKB/TrEMBL
    A0A1D5QIK3
    Related
    ENSMMUP00000029224.4, ENSMMUT00000031225.4
    Conserved Domains (6) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:133 → 641
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:25 → 174
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    COG0724
    Location:207 → 414
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    PRK12678
    Location:717 → 906
    PRK12678; transcription termination factor Rho; Provisional
    cl17169
    Location:303 → 376
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_015142378.2 → XP_014997864.1  SAFB-like transcription modulator isoform X6

    UniProtKB/TrEMBL
    A0A1D5QIK3
    Conserved Domains (5) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:135 → 639
    PTZ00121; MAEBL; Provisional
    COG0724
    Location:205 → 412
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    PRK12678
    Location:715 → 904
    PRK12678; transcription termination factor Rho; Provisional
    cl17169
    Location:301 → 374
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_002804792.3 → XP_002804838.2  SAFB-like transcription modulator isoform X4

    UniProtKB/TrEMBL
    A0A1D5QIK3
    Conserved Domains (6) summary
    smart00513
    Location:22 → 56
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:149 → 657
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:25 → 190
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    COG0724
    Location:223 → 430
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    PRK12678
    Location:733 → 922
    PRK12678; transcription termination factor Rho; Provisional
    cl17169
    Location:319 → 392
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.