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RMND5B required for meiotic nuclear division 5 homolog B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701840, updated on 17-Aug-2024

Summary

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Official Symbol
RMND5Bprovided by VGNC
Official Full Name
required for meiotic nuclear division 5 homolog Bprovided by VGNC
Primary source
VGNC:VGNC:76836
Locus tag
EGK_17207
See related
Ensembl:ENSMMUG00000018758
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See RMND5B in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (175455195..175474173)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (176611515..176630126)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein encoded by LINC00596 Neighboring gene NEDD4 binding protein 3 Neighboring gene NHP2 ribonucleoprotein Neighboring gene NAD(P)H-hydrate epimerase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein transferase RMND5B
Names
protein RMD5 homolog B
NP_001248522.1
XP_014997024.2
XP_014997026.2
XP_014997027.2
XP_014997028.2
XP_014997029.2
XP_014997030.2
XP_014997031.2
XP_014997032.2
XP_014997033.2
XP_014997035.2
XP_014997037.2
XP_028704995.1
XP_028704997.1
XP_028704998.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261593.1 → NP_001248522.1  E3 ubiquitin-protein transferase RMND5B

    See identical proteins and their annotated locations for NP_001248522.1

    Status: PROVISIONAL

    Source sequence(s)
    JV043445
    UniProtKB/TrEMBL
    A0A5F7ZBG2, H9ER50
    Conserved Domains (5) summary
    smart00667
    Location:116 → 148
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:156 → 212
    CTLH; C-terminal to LisH motif
    smart00757
    Location:210 → 304
    CRA; CT11-RanBPM
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain
    pfam13445
    Location:338 → 377
    zf-RING_UBOX; RING-type zinc-finger

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    175455195..175474173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015141544.2 → XP_014997030.2  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBG2, F6XV90, F6XVA1
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  2. XM_015141546.2 → XP_014997032.2  E3 ubiquitin-protein transferase RMND5B isoform X3

    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  3. XM_015141543.2 → XP_014997029.2  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBG2, F6XV90, F6XVA1
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  4. XM_028849165.1 → XP_028704998.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBG2, F6XV90, F6XVA1
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  5. XM_015141545.2 → XP_014997031.2  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBG2, F6XV90, F6XVA1
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  6. XM_015141541.2 → XP_014997027.2  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZBG2
    Conserved Domains (2) summary
    COG5109
    Location:114 → 434
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:196 → 340
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  7. XM_015141540.2 → XP_014997026.2  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZBG2
    Conserved Domains (2) summary
    COG5109
    Location:114 → 434
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:196 → 340
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  8. XM_015141542.2 → XP_014997028.2  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZBG2
    Conserved Domains (2) summary
    COG5109
    Location:114 → 434
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:196 → 340
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  9. XM_028849164.1 → XP_028704997.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBG2, F6XV90, F6XVA1
    Related
    ENSMMUP00000024688.4, ENSMMUT00000026373.4
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  10. XM_015141549.2 → XP_014997035.2  E3 ubiquitin-protein transferase RMND5B isoform X3

    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  11. XM_015141551.2 → XP_014997037.2  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZBG2
    Conserved Domains (2) summary
    COG5109
    Location:114 → 434
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:196 → 340
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  12. XM_015141538.2 → XP_014997024.2  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZBG2
    Conserved Domains (2) summary
    COG5109
    Location:114 → 434
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:196 → 340
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  13. XM_028849162.1 → XP_028704995.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBG2, F6XV90, F6XVA1
    Related
    ENSMMUP00000033629.3, ENSMMUT00000040578.3
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  14. XM_015141547.2 → XP_014997033.2  E3 ubiquitin-protein transferase RMND5B isoform X3

    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain
Nucleotide Protein
Heading Accession and Version

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