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SSC5D scavenger receptor cysteine rich family member with 5 domains [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701740, updated on 17-Aug-2024

Summary

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Official Symbol
SSC5Dprovided by VGNC
Official Full Name
scavenger receptor cysteine rich family member with 5 domainsprovided by VGNC
Primary source
VGNC:VGNC:112054
See related
Ensembl:ENSMMUG00000005014
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SSC5D in Genome Data Viewer
Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (55237744..55263573)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (50703255..50728574)

Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 628 Neighboring gene N-acetyltransferase 14 (putative) Neighboring gene SH3 domain binding kinase family member 2 Neighboring gene SH3 domain binding kinase family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041772.1 Reference Mmul_10 Primary Assembly

    Range
    55237744..55263573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028840164.1 → XP_028695997.1  soluble scavenger receptor cysteine-rich domain-containing protein SSC5D isoform X1

    UniProtKB/TrEMBL
    F7ALJ7
    Conserved Domains (2) summary
    PHA03269
    Location:1324 → 1476
    PHA03269; envelope glycoprotein C; Provisional
    smart00202
    Location:782 → 882
    SR; Scavenger receptor Cys-rich

  2. XM_001090042.4 → XP_001090042.4  soluble scavenger receptor cysteine-rich domain-containing protein SSC5D isoform X2

    UniProtKB/TrEMBL
    A0A1D5RG52, F7ALJ7
    Related
    ENSMMUP00000059296.2, ENSMMUT00000053644.2
    Conserved Domains (2) summary
    PHA03269
    Location:1314 → 1466
    PHA03269; envelope glycoprotein C; Provisional
    smart00202
    Location:772 → 872
    SR; Scavenger receptor Cys-rich

  3. XM_028840165.1 → XP_028695998.1  soluble scavenger receptor cysteine-rich domain-containing protein SSC5D isoform X3

    UniProtKB/TrEMBL
    F7ALJ7
    Conserved Domains (2) summary
    PHA03269
    Location:1053 → 1205
    PHA03269; envelope glycoprotein C; Provisional
    smart00202
    Location:511 → 611
    SR; Scavenger receptor Cys-rich
Nucleotide Protein
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