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JOSD1 Josephin domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701426, updated on 17-Aug-2024

Summary

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Official Symbol
JOSD1provided by VGNC
Official Full Name
Josephin domain containing 1provided by VGNC
Primary source
VGNC:VGNC:73920
Locus tag
EGK_03049
See related
Ensembl:ENSMMUG00000021083
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
Josephin-1
Orthologs
human mouse all
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Genomic context

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See JOSD1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (12860014..12877746)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (80671049..80689164, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene Sad1 and UNC84 domain containing 2 Neighboring gene thioredoxin-dependent peroxide reductase, mitochondrial pseudogene Neighboring gene GTP binding protein 1 Neighboring gene translocase of outer mitochondrial membrane 22 Neighboring gene chibby 1, beta catenin antagonist Neighboring gene family with sequence similarity 227 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
josephin-1
NP_001253802.1
XP_015005804.1
XP_015005809.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266873.1 → NP_001253802.1  josephin-1

    See identical proteins and their annotated locations for NP_001253802.1

    Status: PROVISIONAL

    Source sequence(s)
    JV048862
    UniProtKB/TrEMBL
    A0A5S6R9U3, A0A8J8YJR9, F7GY34, G7N3V7
    Related
    ENSMMUP00000027753.4, ENSMMUT00000029654.4
    Conserved Domains (1) summary
    pfam02099
    Location:31 → 173
    Josephin

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    12860014..12877746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015150318.2 → XP_015005804.1  josephin-1 isoform X1

    UniProtKB/TrEMBL
    A0A5S6R9U3, A0A8J8YJR9, F7GY34, G7N3V7
    Conserved Domains (1) summary
    pfam02099
    Location:31 → 173
    Josephin

  2. XM_015150323.2 → XP_015005809.1  josephin-1 isoform X1

    UniProtKB/TrEMBL
    A0A5S6R9U3, A0A8J8YJR9, F7GY34, G7N3V7
    Conserved Domains (1) summary
    pfam02099
    Location:31 → 173
    Josephin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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