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KDM4A lysine demethylase 4A [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701272, updated on 17-Aug-2024

Summary

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Official Symbol
KDM4Aprovided by VGNC
Official Full Name
lysine demethylase 4Aprovided by VGNC
Primary source
VGNC:VGNC:99987
See related
Ensembl:ENSMMUG00000012479
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
JMJD2A
Orthologs
human mouse all
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Genomic context

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See KDM4A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (180755709..180813557, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (43142505..43199810)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3 Neighboring gene serine hydroxymethyltransferase, cytosolic pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene protein tyrosine phosphatase receptor type F Neighboring gene SZT2 subunit of KICSTOR complex Neighboring gene hydroxypyruvate isomerase (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 4A
Names
jumonji domain containing 2A
XP_028690478.1
XP_028690480.1
XP_028690486.1
XP_028690494.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    180755709..180813557 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028834645.1 → XP_028690478.1  lysine-specific demethylase 4A isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZYY3, A0A8J8YB68, F7FB62, G7MGL6
    Related
    ENSMMUP00000016387.4, ENSMMUT00000017497.4
    Conserved Domains (5) summary
    smart00545
    Location:13 → 55
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00333
    Location:954 → 1009
    TUDOR; Tudor domain
    cd15575
    Location:666 → 765
    PHD_JMJD2A; PHD finger found in Jumonji domain-containing protein 2A (JMJD2A)
    cd15713
    Location:774 → 883
    ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
    pfam02373
    Location:175 → 291
    JmjC; JmjC domain, hydroxylase

  2. XM_028834647.1 → XP_028690480.1  lysine-specific demethylase 4A isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZYY3, A0A8J8YB68, F7FB62, G7MGL6
    Related
    ENSMMUP00000069863.1, ENSMMUT00000107791.1
    Conserved Domains (5) summary
    smart00545
    Location:13 → 55
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00333
    Location:954 → 1009
    TUDOR; Tudor domain
    cd15575
    Location:666 → 765
    PHD_JMJD2A; PHD finger found in Jumonji domain-containing protein 2A (JMJD2A)
    cd15713
    Location:774 → 883
    ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
    pfam02373
    Location:175 → 291
    JmjC; JmjC domain, hydroxylase

  3. XM_028834653.1 → XP_028690486.1  lysine-specific demethylase 4A isoform X2

    Conserved Domains (4) summary
    smart00333
    Location:863 → 918
    TUDOR; Tudor domain
    cd15575
    Location:575 → 674
    PHD_JMJD2A; PHD finger found in Jumonji domain-containing protein 2A (JMJD2A)
    cd15713
    Location:683 → 792
    ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
    pfam02373
    Location:84 → 200
    JmjC; JmjC domain, hydroxylase

  4. XM_028834661.1 → XP_028690494.1  lysine-specific demethylase 4A isoform X3

    Conserved Domains (2) summary
    smart00545
    Location:13 → 55
    JmjN; Small domain found in the jumonji family of transcription factors
    cl21464
    Location:175 → 212
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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