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IRF5 interferon regulatory factor 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700725, updated on 17-Aug-2024

Summary

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Official Symbol
IRF5provided by VGNC
Official Full Name
interferon regulatory factor 5provided by VGNC
Primary source
VGNC:VGNC:73763
Locus tag
EGK_14120
See related
Ensembl:ENSMMUG00000018478
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See IRF5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (155187611..155199826)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (154985609..154998199)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene kielin cysteine rich BMP regulator Neighboring gene filamin-C Neighboring gene transportin 3 Neighboring gene ornithine decarboxylase pseudogene Neighboring gene triosephosphate isomerase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    155187611..155199826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028846278.1 → XP_028702111.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A8J8Y769, F6X265, F7H6R4, G7MMB9
    Related
    ENSMMUP00000071460.1, ENSMMUT00000104108.1
    Conserved Domains (2) summary
    pfam00605
    Location:16 → 121
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:250 → 433
    IRF-3; Interferon-regulatory factor 3

  2. XM_001092569.4 → XP_001092569.1  interferon regulatory factor 5 isoform X3

    See identical proteins and their annotated locations for XP_001092569.1

    UniProtKB/TrEMBL
    A0A8J8Y769, F6X265, F7H6R4, G7MMB9
    Related
    ENSMMUP00000024311.3, ENSMMUT00000025982.4
    Conserved Domains (2) summary
    pfam00605
    Location:16 → 121
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:250 → 433
    IRF-3; Interferon-regulatory factor 3

  3. XM_015134878.2 → XP_014990364.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A8J8Y769, F6X265, F7H6R4, G7MMB9
    Conserved Domains (2) summary
    pfam00605
    Location:16 → 121
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:250 → 433
    IRF-3; Interferon-regulatory factor 3

  4. XM_028846276.1 → XP_028702109.1  interferon regulatory factor 5 isoform X1

    UniProtKB/TrEMBL
    F6X274
    Related
    ENSMMUP00000024310.3, ENSMMUT00000025981.4
    Conserved Domains (2) summary
    pfam00605
    Location:147 → 252
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:381 → 564
    IRF-3; Interferon-regulatory factor 3

  5. XM_028846277.1 → XP_028702110.1  interferon regulatory factor 5 isoform X2

    Conserved Domains (2) summary
    pfam00605
    Location:147 → 252
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:381 → 511
    IRF-3; Interferon-regulatory factor 3
Nucleotide Protein
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