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LRSAM1 leucine rich repeat and sterile alpha motif containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700704, updated on 17-Aug-2024

Summary

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Official Symbol
LRSAM1provided by VGNC
Official Full Name
leucine rich repeat and sterile alpha motif containing 1provided by VGNC
Primary source
VGNC:VGNC:74353
Locus tag
EGK_07863
See related
Ensembl:ENSMMUG00000009956
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See LRSAM1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (13110411..13163238, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (11421114..11475732, complement)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672623 Neighboring gene niban apoptosis regulator 2 Neighboring gene small nucleolar RNA SNORA65 Neighboring gene ribosomal protein L12 Neighboring gene zinc finger protein 79

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase LRSAM1
XP_014972273.2
XP_014972274.2
XP_014972275.2
XP_014972276.2
XP_014972278.2
XP_028690632.1
XP_028690633.1
XP_028690635.1
XP_028690636.1
XP_028690637.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    13110411..13163238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028834802.1 → XP_028690635.1  E3 ubiquitin-protein ligase LRSAM1 isoform X5

    UniProtKB/TrEMBL
    A0A5F8AK09
    Conserved Domains (5) summary
    cd09523
    Location:541 → 605
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:33 → 155
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 54
    LRR_1; leucine-rich repeat [structural motif]
    cd16515
    Location:648 → 687
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:203 → 507
    DUF5401; Family of unknown function (DUF5401)

  2. XM_015116792.2 → XP_014972278.2  E3 ubiquitin-protein ligase LRSAM1 isoform X6

    UniProtKB/TrEMBL
    A0A5F8AK09, F6TTT5
    Related
    ENSMMUP00000038874.3, ENSMMUT00000045829.3
    Conserved Domains (5) summary
    cd09523
    Location:540 → 604
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:65 → 181
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:647 → 686
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:244 → 475
    DUF5401; Family of unknown function (DUF5401)

  3. XM_015116789.2 → XP_014972275.2  E3 ubiquitin-protein ligase LRSAM1 isoform X2

    UniProtKB/TrEMBL
    A0A5F8AK09, H9EV32
    Related
    ENSMMUP00000075755.1, ENSMMUT00000081707.1
    Conserved Domains (5) summary
    cd09523
    Location:567 → 631
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:65 → 181
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:674 → 713
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:229 → 533
    DUF5401; Family of unknown function (DUF5401)

  4. XM_015116790.2 → XP_014972276.2  E3 ubiquitin-protein ligase LRSAM1 isoform X4

    UniProtKB/TrEMBL
    A0A5F8AK09
    Conserved Domains (5) summary
    cd09523
    Location:550 → 614
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:75 → 191
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:657 → 696
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:254 → 485
    DUF5401; Family of unknown function (DUF5401)

  5. XM_015116787.2 → XP_014972273.2  E3 ubiquitin-protein ligase LRSAM1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AK09
    Conserved Domains (5) summary
    cd09523
    Location:577 → 641
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:75 → 191
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:684 → 723
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:239 → 543
    DUF5401; Family of unknown function (DUF5401)

  6. XM_028834803.1 → XP_028690636.1  E3 ubiquitin-protein ligase LRSAM1 isoform X6

    UniProtKB/TrEMBL
    A0A5F8AK09, F6TTT5
    Related
    ENSMMUP00000013026.4, ENSMMUT00000013902.4
    Conserved Domains (5) summary
    cd09523
    Location:540 → 604
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:65 → 181
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:647 → 686
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:244 → 475
    DUF5401; Family of unknown function (DUF5401)

  7. XM_028834799.1 → XP_028690632.1  E3 ubiquitin-protein ligase LRSAM1 isoform X2

    UniProtKB/TrEMBL
    A0A5F8AK09, H9EV32
    Related
    ENSMMUP00000077279.1, ENSMMUT00000092351.1
    Conserved Domains (5) summary
    cd09523
    Location:567 → 631
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:65 → 181
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:674 → 713
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:229 → 533
    DUF5401; Family of unknown function (DUF5401)

  8. XM_028834804.1 → XP_028690637.1  E3 ubiquitin-protein ligase LRSAM1 isoform X7

    UniProtKB/TrEMBL
    A0A5F8AK09
    Conserved Domains (5) summary
    cd09523
    Location:535 → 599
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:60 → 176
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:53 → 74
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:642 → 681
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:239 → 470
    DUF5401; Family of unknown function (DUF5401)

  9. XM_028834800.1 → XP_028690633.1  E3 ubiquitin-protein ligase LRSAM1 isoform X3

    UniProtKB/TrEMBL
    A0A5F8AK09
    Conserved Domains (5) summary
    cd09523
    Location:562 → 626
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:60 → 176
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:53 → 74
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:669 → 708
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:224 → 528
    DUF5401; Family of unknown function (DUF5401)

  10. XM_015116788.2 → XP_014972274.2  E3 ubiquitin-protein ligase LRSAM1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AK09
    Conserved Domains (5) summary
    cd09523
    Location:577 → 641
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:75 → 191
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:33 → 54
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:684 → 723
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    pfam17380
    Location:239 → 543
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein
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