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KDSR 3-ketodihydrosphingosine reductase [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700476, updated on 17-Aug-2024

Summary

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Official Symbol
KDSRprovided by VGNC
Official Full Name
3-ketodihydrosphingosine reductaseprovided by VGNC
Primary source
VGNC:VGNC:73954
See related
Ensembl:ENSMMUG00000006578
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See KDSR in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (16743558..16785238)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (52902337..52942399, complement)

Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial pseudogene Neighboring gene serpin family B member 5 Neighboring gene 26S proteasome regulatory subunit 8 pseudogene Neighboring gene vacuolar protein sorting 4 homolog B Neighboring gene BCL2 apoptosis regulator Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114673747

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydrosphinganine reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3-keto-sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-ketodihydrosphingosine reductase
NP_001244872.1
XP_028693546.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257943.1 → NP_001244872.1  3-ketodihydrosphingosine reductase precursor

    See identical proteins and their annotated locations for NP_001244872.1

    Status: PROVISIONAL

    Source sequence(s)
    JU333775
    UniProtKB/TrEMBL
    A0A1D5Q761, A0A1D5QW12, F7HPT5
    Related
    ENSMMUP00000008653.4, ENSMMUT00000009209.4
    Conserved Domains (1) summary
    cd08939
    Location:32 → 268
    KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041771.1 Reference Mmul_10 Primary Assembly

    Range
    16743558..16785238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028837713.1 → XP_028693546.1  3-ketodihydrosphingosine reductase isoform X1

    UniProtKB/TrEMBL
    A0A1D5QW12, A0A5F7ZYG5
    Related
    ENSMMUP00000069692.1, ENSMMUT00000090194.1
    Conserved Domains (1) summary
    cd08939
    Location:32 → 240
    KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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